Mercurial > repos > iuc > presto_alignsets

comparison presto_macros.xml @ 2:fa4cf8d895f4 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/presto commit 19e832988729a92be5426131fc6114e1f7237982"
author iuc
date Fri, 02 Jul 2021 15:34:09 +0000
parents 119c30b07de2
children 0b4bd722367d
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1:119c30b07de2 2:fa4cf8d895f4
3 <citations> 3 <citations>
4 <citation type="doi">10.1093/bioinformatics/btu138</citation> 4 <citation type="doi">10.1093/bioinformatics/btu138</citation>
5 <yield /> 5 <yield />
6 </citations> 6 </citations>
7 </xml> 7 </xml>
8
9 <token name="@TOOL_VERSION@">0.6.2</token>
8 10
9 <xml name="requirements"> 11 <xml name="requirements">
10 <requirements> 12 <requirements>
11 <requirement type="package" version="0.6.2">presto</requirement> 13 <requirement type="package" version="@TOOL_VERSION@">presto</requirement>
12 </requirements> 14 </requirements>
13 </xml> 15 </xml>
14 16
15 <xml name="presto-coord-param"> 17 <xml name="presto-coord-param">
16 <param argument="--coord" type="select" value="presto" label="Coordinate" help="The format of the sequence identifier which defines shared coordinate information across mate pairs."> 18 <param argument="--coord" type="select" value="presto" label="Coordinate" help="The format of the sequence identifier which defines shared coordinate information across mate pairs.">
36 <validator type="regex" message="Value may include alphanumeric characters, underscores and spaces.">[A-Za-z0-9_ ]+</validator> 38 <validator type="regex" message="Value may include alphanumeric characters, underscores and spaces.">[A-Za-z0-9_ ]+</validator>
37 </xml> 39 </xml>
38 40
39 <token name="@PRESTO_URL_BASE@">https://presto.readthedocs.io</token> 41 <token name="@PRESTO_URL_BASE@">https://presto.readthedocs.io</token>
40 42
41 <!-- When modifying this file ensure that the version here matches the version above in requirements. -->
42 <token name="@PRESTO_VERSION@">0.5.4</token>
43
44 <token name="@HELP_NOTE@"><![CDATA[ 43 <token name="@HELP_NOTE@"><![CDATA[
45 44
46 ==== 45 ====
47 46
48 **Note about limitations of pRESTO tools within Galaxy:** 47 **Note about limitations of pRESTO tools within Galaxy:**