Mercurial > repos > iuc > presto_buildconsensus

comparison presto_buildconsensus.xml @ 4:ef31bdd0c9ed draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/presto commit 1beb51cefbe9e6edc8930c7ae0421f28e7bb93c8
author iuc
date Fri, 04 Oct 2024 09:02:54 +0000
parents 1844a3d2c887
children
comparison
equal deleted inserted replaced
3:1844a3d2c887 4:ef31bdd0c9ed
1 <tool id="presto_buildconsensus" name="pRESTO BuildConsensus" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> 1 <tool id="presto_buildconsensus" name="pRESTO BuildConsensus" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
2 <description>Builds a consensus sequence for each set of input sequences</description> 2 <description>Builds a consensus sequence for each set of input sequences</description>
3 <expand macro="bio_tools"/>
4 <macros> 3 <macros>
5 <import>presto_macros.xml</import> 4 <import>presto_macros.xml</import>
6 </macros> 5 </macros>
6 <expand macro="bio_tools"/>
7 7
8 <expand macro="requirements"/> 8 <expand macro="requirements"/>
9 9
10 <version_command>BuildConsensus.py --version</version_command> 10 <version_command>BuildConsensus.py --version</version_command>
11 <command detect_errors="exit_code"><![CDATA[ 11 <command detect_errors="exit_code"><![CDATA[
85 <data name="fastq_out" format="fastq" from_work_dir="tmp_consensus-pass.fastq"/> 85 <data name="fastq_out" format="fastq" from_work_dir="tmp_consensus-pass.fastq"/>
86 <expand macro="presto-log-output"/> 86 <expand macro="presto-log-output"/>
87 </outputs> 87 </outputs>
88 88
89 <tests> 89 <tests>
90 <test> 90 <test expect_num_outputs="1">
91 <param name="fastq_in" value="presto_buildconsensus_test_input.fastq"/> 91 <param name="fastq_in" value="presto_buildconsensus_test_input.fastq"/>
92 <param name="n" value="2"/> 92 <param name="n" value="2"/>
93 <param name="pf" value="PRIMER"/> 93 <param name="pf" value="PRIMER"/>
94 <param name="maxgap" value="0.5"/> 94 <param name="maxgap" value="0.5"/>
95 <param name="prcons" value="0.6"/> 95 <param name="prcons" value="0.6"/>
96 <param name="filter" value="error"/> 96 <param name="filter" value="error"/>
97 <param name="maxerror" value="0.1"/> 97 <param name="maxerror" value="0.1"/>
98 <output name="fastq_out" file="presto_buildconsensus_test_maxerror_output.fastq" sort="true"/> 98 <output name="fastq_out" file="presto_buildconsensus_test_maxerror_output.fastq" sort="true"/>
99 </test> 99 </test>
100 <test> 100 <test expect_num_outputs="1">
101 <param name="fastq_in" value="presto_buildconsensus_test_input.fastq"/> 101 <param name="fastq_in" value="presto_buildconsensus_test_input.fastq"/>
102 <param name="n" value="2"/> 102 <param name="n" value="2"/>
103 <param name="pf" value="PRIMER"/> 103 <param name="pf" value="PRIMER"/>
104 <param name="maxgap" value="0.5"/> 104 <param name="maxgap" value="0.5"/>
105 <param name="prcons" value="0.6"/> 105 <param name="prcons" value="0.6"/>