Mercurial > repos > iuc > presto_filterseq

diff presto_filterseq.xml @ 4:4a4e086f6e38 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/presto commit 1beb51cefbe9e6edc8930c7ae0421f28e7bb93c8
author iuc
date Fri, 04 Oct 2024 09:02:30 +0000
parents 196b83ac37f2
children
line wrap: on
line diff
--- a/presto_filterseq.xml	Sat Sep 25 18:30:46 2021 +0000
+++ b/presto_filterseq.xml	Fri Oct 04 09:02:30 2024 +0000
@@ -1,9 +1,9 @@
 <tool id="presto_filterseq" name="pRESTO FilterSeq" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
     <description>Filters and/or masks reads based on length, quality, missing bases and repeats.</description>
-    <expand macro="bio_tools"/>
     <macros>
         <import>presto_macros.xml</import>
     </macros>
+    <expand macro="bio_tools"/>
     
     <expand macro="requirements"/>
     
@@ -78,37 +78,37 @@
     </outputs>
     
     <tests>
-        <test>
+        <test expect_num_outputs="1">
             <param  name="command" value="length"/>
             <param  name="n" value="299"/>
             <param  name="fastq_in" value="presto_filterseq_test_in.fastq"/>
             <output name="fastq_out" file="presto_filterseq_length_test_out.fastq" sort="true"/>
         </test>
-        <test>
+        <test expect_num_outputs="1">
             <param  name="command" value="missing"/>
             <param  name="n" value="281"/>
             <param  name="fastq_in" value="presto_filterseq_test_in.fastq"/>
             <output name="fastq_out" file="presto_filterseq_missing_test_out.fastq" sort="true"/>
         </test>
-        <test>
+        <test expect_num_outputs="1">
             <param  name="command" value="repeats"/>
             <param  name="n" value="8"/>
             <param  name="fastq_in" value="presto_filterseq_test_in.fastq"/>
             <output name="fastq_out" file="presto_filterseq_repeats_test_out.fastq" sort="true"/>
         </test>
-        <test>
+        <test expect_num_outputs="1">
             <param  name="command" value="quality"/>
             <param  name="q" value="30"/>
             <param  name="fastq_in" value="presto_filterseq_test_in.fastq"/>
             <output name="fastq_out" file="presto_filterseq_quality_test_out.fastq" sort="true"/>
         </test>
-        <test>
+        <test expect_num_outputs="1">
             <param  name="command" value="maskqual"/>
             <param  name="q" value="30"/>
             <param  name="fastq_in" value="presto_filterseq_test_in.fastq"/>
             <output name="fastq_out" file="presto_filterseq_maskqual_test_out.fastq" sort="true"/>
         </test>
-        <test>
+        <test expect_num_outputs="1">
             <param  name="command" value="trimqual"/>
             <param  name="q" value="30"/>
             <param  name="fastq_in" value="presto_filterseq_test_in.fastq"/>