Mercurial > repos > iuc > presto_maskprimers

diff presto_maskprimers.xml @ 4:df0797c61790 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/presto commit 1beb51cefbe9e6edc8930c7ae0421f28e7bb93c8
author iuc
date Fri, 04 Oct 2024 09:04:50 +0000
parents 98b0b4c22e69
children
line wrap: on
line diff
--- a/presto_maskprimers.xml	Sat Sep 25 18:33:08 2021 +0000
+++ b/presto_maskprimers.xml	Fri Oct 04 09:04:50 2024 +0000
@@ -1,9 +1,9 @@
 <tool id="presto_maskprimers" name="pRESTO MaskPrimers" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
     <description>Removes primers and annotates sequences with primer and barcode identifiers.</description>
-    <expand macro="bio_tools"/>
     <macros>
         <import>presto_macros.xml</import>
     </macros>
+    <expand macro="bio_tools"/>
     
     <expand macro="requirements"/>
     
@@ -72,7 +72,7 @@
     </outputs>
     
     <tests>
-        <test>
+        <test expect_num_outputs="1">
             <param  name="command" value="score"/>
             <param  name="fastq_in" value="presto_maskprimers_without_barcode_test_in.fastq"/>
             <param  name="start" value="0"/>
@@ -81,7 +81,7 @@
             <param  name="maxerror" value="0.15"/>
             <output name="fastq_out" file="presto_maskprimers_without_barcode_test_score_out.fastq" sort="true"/>
         </test>
-        <test>
+        <test expect_num_outputs="1">
             <param  name="command" value="score"/>
             <param  name="fastq_in" value="presto_maskprimers_with_barcode_test_in.fastq"/>
             <param  name="start" value="17"/>
@@ -91,7 +91,7 @@
             <param  name="maxerror" value="0.15"/>
             <output name="fastq_out" file="presto_maskprimers_with_barcode_test_score_out.fastq" sort="true"/>
         </test>
-        <test>
+        <test expect_num_outputs="1">
             <param  name="command" value="align"/>
             <param  name="fastq_in" value="presto_maskprimers_without_barcode_test_in.fastq"/>
             <param  name="primers_in" value="read1_primers.fasta"/>
@@ -100,7 +100,7 @@
             <param  name="maxlen" value="25"/>
             <output name="fastq_out" file="presto_maskprimers_without_barcode_test_align_out.fastq" sort="true"/>
         </test>
-        <test>
+        <test expect_num_outputs="1">
             <param  name="command" value="align"/>
             <param  name="fastq_in" value="presto_maskprimers_with_barcode_test_in.fastq"/>
             <param  name="barcode" value="true"/>