# HG changeset patch # User iuc # Date 1624379863 0 # Node ID 61c1ae41a6bdfdff41c4800f060810b210e35a2d # Parent 14e648d05cce42c68743dfdcb1a87735917c0b83 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/presto commit a42c43c1528ae7b7efe2c5ef848681d574df0405" diff -r 14e648d05cce -r 61c1ae41a6bd presto_macros.xml --- a/presto_macros.xml Wed May 30 15:34:53 2018 -0400 +++ b/presto_macros.xml Tue Jun 22 16:37:43 2021 +0000 @@ -8,7 +8,7 @@ - presto + presto @@ -36,7 +36,7 @@ [A-Za-z0-9_ ]+ - https://presto.readthedocs.io/en/latest/tools + https://presto.readthedocs.io 0.5.4 @@ -55,4 +55,4 @@ - Steps that take a single set of fastq inputs can only take a single file * The ``--outdir`` and ``--outname`` options are not supported; output files are named directly ]]> - \ No newline at end of file + diff -r 14e648d05cce -r 61c1ae41a6bd presto_maskprimers.xml --- a/presto_maskprimers.xml Wed May 30 15:34:53 2018 -0400 +++ b/presto_maskprimers.xml Tue Jun 22 16:37:43 2021 +0000 @@ -115,7 +115,7 @@ `_ for more information. +See the `pRESTO online help <@PRESTO_BASE_URL@/en/stable>`_ for more information. @HELP_NOTE@ ]]> diff -r 14e648d05cce -r 61c1ae41a6bd test-data/presto_maskprimers_with_barcode_test_score_out.fastq --- a/test-data/presto_maskprimers_with_barcode_test_score_out.fastq Wed May 30 15:34:53 2018 -0400 +++ b/test-data/presto_maskprimers_with_barcode_test_score_out.fastq Tue Jun 22 16:37:43 2021 +0000 @@ -1,4 +1,4 @@ -@M01873:M01873:000000000-B9G3J:1:2116:20980:12498 2:N:0:CTATAC|SEQORIENT=F|PRIMER=TS-shift3|BARCODE=ATCTTTGCGGCTGGTTA +@M01873:M01873:000000000-B9G3J:1:2116:20980:12498 2:N:0:CTATAC|PRIMER=TS-shift3|BARCODE=ATCTTTGCGGCTGGTTA GTGCCTACGGGGACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCCACAATAAGAACTACTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGCCCCTGACCGATTCAGTGGCCGCGGGTCTGGGACAGAGTTCACTCTCAACATCAGCAGCATGCAGTCGGAAGA + GGGGGGGGGG7CFGGGGGGGEFGFFFGFGGGGGGFFGF8FFEGGGGGGGGFGFGCGFGGGGGGGGGCCFFGGGGGFGGGG9D+44,@3DCFGC8CGGGFGC9@CGGGGGD8CGG?C79,1556C*00BC5D*/=EC5C4C*);7ECF*;>*0:9+FGGGGCCFGGF,@EDFFF6DFEDFGF8>CCFGGGGFFF9:@C79=6@<=;EFF,=,5C6,+,>CGD7:DF?CFF*0;CG4@+;>C7CDGGFFG7>+*2))**04C4?CC