Mercurial > repos > iuc > presto_pairseq

diff test-data/presto_parselog_test_in.txt @ 0:f47efbc66fad draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/presto commit 5d4da3eb59439ce5b1eea211b4ad1d47807d7acb
author iuc
date Wed, 30 May 2018 15:37:15 -0400
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/presto_parselog_test_in.txt	Wed May 30 15:37:15 2018 -0400
@@ -0,0 +1,100 @@
+     ID> M01873:M01873:000000000-B9G3J:1:2116:20980:12498
+    SEQ> GACAGATGGTGCAGCCACAGTTCGTTTGATCTCCAGCTTGGTCCCCTGGCCAAAAGTGGGAGGAGTACTATAATATTGCTGACAGTAATAAACTGCCACATCTTCAGCCTGCAGGCTGCTGATGGTGAGAGTGAAATCTGTCCCAGACCCGCTGCCACTGAATCGGTCAGGGACCCCGGATTCCCGGGTAGATGCCCAGTAACTGAGCAGCTTAGGAGGCTGTCCTGGTTTCTGCTGGTACCAAGCTAAGTAGTTCTTATTGTTGGAGCTGTATAAAACACTCTGGTTGGACTTGCAGTT
+QUALITY> 33.166666666666664
+
+     ID> M01873:M01873:000000000-B9G3J:1:2103:2227:11139
+    SEQ> GGGTGCTGCAGAGGCTCAGCGGGAAGACCTTGGGGCTGGTCGGGGATGCAGAGGAGACGGTGACCAGGGTTCCCTGGCCCCAGAAGTCAAACTCCGCCACCTCCGTTGTAGCTCCCACTACAGTCGTCGTATCCCTCGCACAGTAATAAACAGCCGTGTCCTCTGCTGTCAGGCCGTTCATTTGCAGATAAAGTGAATTCTTGGCGTTGTCTCTGGAGATGCTGAATCGGAACTTCACAGAATCTGCATAGTACTCGGTTGTTCAATTTCTTCTATTGTCTTAAACCCACTCCAGCCCCT
+QUALITY> 23.87
+
+     ID> M01873:M01873:000000000-B9G3J:1:2110:13535:17883
+    SEQ> GACAGATGGTGCAGCCACAGTTCGCTTGATCTCCACCTTGGTCCCCCCGCCGAAAGTACACCAGTCGCTACGTTGCTGACAGAAATAAACTGCAAAATCTTCAGGCTCTAGGCTGTCGATGGTGAGAGTGAAGTCTGTCCCAGACCCACTGCCACTGAACCTGGCTGGGACGCCAGTGGCCCTGTTGGACGCATCATAGATGAGGAGCCTGGGAGCCTGGCCAGGTTTCTGTTGGTACCAGGCTAAGTAGGTACCAACATCCTGGCTGGCCCTGCAGGAGAGGGTGGCCCTTTCCCCTGG
+QUALITY> 34.693333333333335
+
+     ID> M01873:M01873:000000000-B9G3J:1:1115:18550:17263
+    SEQ> GGGTGCTGTCTCCTGCCGACAAGACCAACGTCAAGGCCGCCTGGGGTAAGGTCGGCGCGCACGCTGGCGAGTATGGTGCGGAGGCCCTGGAGAGGATGTTCCTGTCCTTCCCCACCACCAAGACCTACTTCCCGTAGATCTCCGCTATCCAAAGACCAGACCGGAAGAGCACACGTCTGAACTCCAGTCACCTATACATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAACGACCAGACTAAGATCGTTAAAAGAAAATGAGTTGATACAGTAGAGCACAGAAGAGTACAAGCACGTGA
+QUALITY> 24.28
+
+     ID> M01873:M01873:000000000-B9G3J:1:1101:10006:14034
+    SEQ> CGACCTCGGGTGGGAACACCTTGTTCAGGTCCTCTAGGATGGAGAGTCGAGTCCCATCACCAAAATGCTGGGGCTGATTGCTACACAGTGCATCATGAGTGTCCCCGTATCGAACAAAGCCATAGAAATAGATCGGAAGAGCACACGTCTGAACTCCAGTCACCTATACATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAATAAGCGAAAGACTGCACGCACTGCACTCGAACAACCAGACATTGATCAAAACAGACACAATAAGGTTAATCATTCTCAATCTAAGCGAACATTCG
+QUALITY> 25.906666666666666
+
+     ID> M01873:M01873:000000000-B9G3J:1:1117:17250:9432
+    SEQ> AGGGCGGGAACAGAGTGACCGAGGGGGCAGCCTTGGGCTGACCTAGGACGGTCAGCTTGGTCCCTCCGCCGAATACCCAAGTGCCAGCCCAGGTCTGACAGTAATAGTCAGCCTCATCCTCAGACTGGAGGCTGGAGATGGTGAGGTAGTGCTCAGCCCCAGAGGTGGAGCCAGAGAAGCGATCAGGGATCCCGTCCCCCTTGCTGTGACTGCCATCACTGTTAACCTTCATCAGATACCGAGGGCCCTTCTGTGGCTGCTGCTGATGCCATGCGATGGCGTAGCTGCTGTGCCCACTGC
+QUALITY> 35.35666666666667
+
+     ID> M01873:M01873:000000000-B9G3J:1:2108:14465:19705
+    SEQ> CGACCTCGGGTGGGAACACGTTTTTCAGGTCCTCTAGCACGGTGAGCCGTGTCCCTGGCCCGAAGAACTGCTCATTGGCCCCTAATGAGCTGGCGCAGAAATATACAGATGTCTGGGAGGAGGCAGCAGACTCCAGAGTGAGGGGGAGGTCCTCTGTGTTTGATCTAGAGACACTGTAGCCATCTGAGACTTCTCCTTTGTTAGTGTCTTGAACACCATATGAGTAATGGATCAGCCTCAGCCCATGTCCCAGGTCTTGTCGATACCAGAACATATTGTTGTGGTTCCAAGTCTGGTGAC
+QUALITY> 36.166666666666664
+
+     ID> M01873:M01873:000000000-B9G3J:1:2111:3554:13238
+    SEQ> GACAGATGGTGCAGCCACAGTTCGTTTGATCTGGAGCTTGGTCCCCTGGCCAGAAGTGTAAGGACAGGGTGTAGTTTGCATGCAGTAATAAATGCCAACATCCTCAGCCCCCACCCTACTGATTTTCAGTGTGAAATCCGTGCCTGTACCACTGCCGCTGAATCTGTCTGGGACCCCAGAGACCAGGTTAGAAACTTTATATATTAGGCGCGTTGGAGATTGGCATGGCCTCTTCTGAAACCAGATCAAGTAGATGTTGACATCACTGTATATGAGGCTTAGAATCGTACTGCGGGAGGT
+QUALITY> 21.26
+
+     ID> M01873:M01873:000000000-B9G3J:1:1112:28236:12457
+    SEQ> CACGGCAGGGTCAGGGTTCTGGATATCAGGTAAAACAGTCAATTGTGTCCCAGATCCAAAGGTCAGTTGCCTTGCAGAACCAGAGTAGAGAGTTCACCACACAGAGGTAGGTGGCTGAATCACTGAGCTTGGAGTCTCTGATGAGCAGGGAAATATACTGGCCGGCTCTATTGAGCTGTGCTGTAAACCTTCCATCTTCATTACCACTGGAGTATACGGACATCAGCAACTTAGGTTCTTTCCTGCAATCCTGTCTGTACCAGAAGAAAGACTGAGAAGCACTGTTGCTGTAAGTACAGT
+QUALITY> 36.72
+
+     ID> M01873:M01873:000000000-B9G3J:1:1119:21261:11479
+    SEQ> CGACCTCGGGTGGGAACAGAGTGACAGTGGGGTTGGCCTTGGGCTGACTTAGGACGGTGACCCTGGTCCCAGTTCCGAAGACCACAGTGCTGCTGTCCCACACCTGACAGGAATAGTCAGCCTCATCCCCGGCTTGGGCTCTGCTGATAATCAGGGTGGCCGTGTTCCCCGAGTTGGAGCCAGAGAATCGGTCAGGGATCCCAGAGGGCCGGTGGATATCCCTATAGATGATCAGCACAGGGGCCTGGCCTGGCTTCTGCTGGAACCAGTACACACTTTTACTTCCAATGTTGTTTCCCC
+QUALITY> 37.026666666666664
+
+     ID> M01873:M01873:000000000-B9G3J:1:1106:23126:20933
+    SEQ> CGACCTCGGGTGGGAACAGAGTGACCGAGGGGGCAGCCTTGGGCTGACCTAGGACGGTCAACTTGGTCCCTCCGCCGAAGACCGAACCACTCAGCCTAAAGTCGTAAGACTGGCAGTAATATAGAGCCTCATCGTCAGGCTGGAGTCCAGTGATGGCCAGGGAGGCTGAGGTGCCAGATTTGGAGGCAGAGAATCGGTCAGGAACTCCTGAGGGCCGATCGTCCTTAGTATGGATGAGGACGTTGGGGGCTGTTCCTGGAACGTGTTGGTACCAGACAATTTCATAACCTGCCCCGATGT
+QUALITY> 26.183333333333334
+
+     ID> M01873:M01873:000000000-B9G3J:1:2111:10779:3698
+    SEQ> AGGGGGGGAACACGGTTTTCCCGTCGTCGAACACTGACAGGCGGGAGCCCGGGCCAACCTACCCCGTATCTGTGACCCCTGGCCCCCGTATACCACTGGCCCCGAGGTAGTAAGCTGTCGGGTTCTCTTGGCCCGATGTCACAGTTAGCGGATACAGTGCCTTCTTGTCCCTATCGATGCTGTAGCTGTCTGCTATATCTACATACTGAAAGTCATTTACTATCTGTCAGTAGTAACTAAATCTCAGACCCTGCCCCGGGCCCTTTCGGTACCAGTGCATGGCCCCGTGTTTCTAATTCT
+QUALITY> 12.566666666666666
+
+     ID> M01873:M01873:000000000-B9G3J:1:2112:20595:25092
+    SEQ> AGGGCGGGAACAGAGTGACAGTGGGGTTGGCCTTGGGCTGACCTAGGACGGTGACCGTGGTCCCAGTTCCGAAGACCCAATAATCACTGGCACTATCCCACACCTGACAGTAATAGTCGGCCTCATCCCCGGCTTCGACCCCGCTGATGGTCAGGGTGGCCGTGTTCCCAGAGTTGGAGCCAGAGAAGCGCTCAGGGATCACTGAGGGCCGGTCTCTATCATAATACATGACCAAAACAGGGGCCGGGCCTGGCGTCTGTTTGTACCAGTGGCCACCCTTTATTCCAATGTTGGCTGCGC
+QUALITY> 26.416666666666668
+
+     ID> M01873:M01873:000000000-B9G3J:1:1112:18419:7621
+    SEQ> CGACCTGGGTGGGAACAGAGTGACCGAGGGGGCAGCCTTGGGCTGACCTGCCCCACAGGCTCCGCAGGCTGGATCGGCTGCTTCCAACTGAGGCTCCAGGGTCTGGGTCCCCGCTTTGCGGTGCAACCATTGGGCGCAGCAGGCCATGGGCGACCATGGCCAGACCCAGCAGCAGCAGGGGCCAGCGCTGCCTGGGACCAGGGCCCAGCTCCTCAGGGGTCTCACAACCCACTTGGCCTGTCTTGGGTCTCATTGGCCTTCAGGTTCAGGGGCACCTCTGGCCCGACTTGCAGCATGGGC
+QUALITY> 33.31666666666667
+
+     ID> M01873:M01873:000000000-B9G3J:1:1101:10014:22200
+    SEQ> CCAGGGGGAAGACCGATGGGCCCTTGGTGGAAGCGAGGTGGGGGTCTCAGCCCTTCCTGTTGTGGCGAGGTACATGTGGGCAGCCTTGCCCACGCTGTCAGCTGCCATTTGTCTTCCTAGGAAATCACAGCTCGGCCCCCAGGTCCCCAGGGTTGTGAACTCCACGCTGCAAACACTAAGAACAGGATTGAAACTCCCCGTATCGGCTTCCAGTAGGAACAGATCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
+QUALITY> 23.25
+
+     ID> M01873:M01873:000000000-B9G3J:1:1109:19388:16328
+    SEQ> AGGGCGGGAACAGAGTGACCGAGGGGGCAGCCTTGGGCTGACCTAGGACGGTCAGCTTGGTCCCTCCGCCGAACACCCAACCATTCAGGCTGTCATCCCATGTAGCACAGTAATAATCAGCCTCATCCTCAGACTGGAGCCCACTGATGGCCAGGGAGGCTGAGGTGCCAGACTTGGAGCCAGAGAATCGGTCAGGGACCCCTGAGGGCCGCTGAGTATTGCTATGGATGAGGAGCTTGGGGGCCGTTCCGGGGAGTTGCTGGTACCAGTTTACATTATTACTTCCGATGTTGGAGCTGC
+QUALITY> 33.88333333333333
+
+     ID> M01873:M01873:000000000-B9G3J:1:1111:16537:24486
+    SEQ> GACAGATGGTGCAGCCACAGTTCGTTTGATCTCCACCTTGGTCCCTCCGCCGAAAGCGAGCGGGGGATTGTAAGTCTGGTGACAGAAGTAAGTTGCAAAATCTTCAGGTTGCAGACTGCTGATGGTGAGAGTGAAATCTGTCCCAGATCCACTCCCACTGAACCTTGACGGGACGCCACTGTGCAAACTGGATGCAGCATAGATCAGGAGCTTAGGGGATTTCCCTGGCTTCAGCTGATACCAATTTACAGAGCTGATACAGCTCTGGTTTGCCCGGCAAGCGATGGACAATATGGCTAC
+QUALITY> 30.52
+
+     ID> M01873:M01873:000000000-B9G3J:1:1110:23072:9989
+    SEQ> GACAGAGGTGCAGCCACAGTTCGTTTGATTTCCACCTTGGTCCCTTGGCCGAACGTCCACGGAGAACTATAATATTGGTGACAGTAATAAACTGCCACATCTTCAGCCTGCAGGCTGCTGATGGTGAGAGTGAAATCTGTCCCAGACGCGCTGCCACTGAATCGGTCAGGGACCCCGGATTCCCGGGTAGATGCCCAGTAAATGAGCAGCTTAGGAGGCTGTCCTGGTTTCTGCTGGTACCAAGCTAAGGAGTTCTCATTGTTGGATCTGTATAAAACACTCTGGCTGGACTTGCAGTTT
+QUALITY> 35.79666666666667
+
+     ID> M01873:M01873:000000000-B9G3J:1:1101:10019:8146
+    SEQ> GGGTGCTGTCGAGGCTCAGCGGGAAGACCTTGGGGCTGGTCGGGGATGCTGAAGAGACGGTGACCATTGTCCCTTGGCCCCACATATCAAAAGCATGCCAGCCACTGCTATATTCTCGAGAACAGTAATACACAGCCGTGTCGTCGGCTCTCAGGCTGTTCATTTGCAGATACAGTGAGTTCTTGGCGTTGTCTCTGGAGATGGTGAATCGGCCCTTCACTGAGTCTGCATAGTATATGTAACTTCTACTAGCATCAATGGATGAGACCCACTCCAGCCCCTTCCCTGGAGCCTGGCGGG
+QUALITY> 34.70666666666666
+
+     ID> M01873:M01873:000000000-B9G3J:1:2101:11039:4739
+    SEQ> GACAGATGGTGCAGCCACAGTTCGTTTGATCTCCACCCTGGTCCCTCCGCCGAAAGTGAGAGGCCACTCGCTACGGTGCTGACAGTAATAAACTGCAAAATCTTCAGGCTCTAGGCTGCTGATGGTGAGAGTGAAGTCTGTCCCAGACCCACTGCCACTGAACCTGGCTGGGATGCCAGTGGCCCTATTGGATGCATCATAGATGAGGAGCCTGGGAGCCTGGCCAGGTTTCTGTTGGTACCAGCC
+QUALITY> 37.22357723577236
+
+     ID> M01873:M01873:000000000-B9G3J:1:2104:24954:20771
+    SEQ> AGGGCGGGAACAGAGTGACCGAGGGGGCAGCCTTGGGCTGACCTAGGACGGTCAGCTTGGTCCCTCCGCCGAACACCCAATGCCAGTGCCCCAGGTCTGACAGTAATAGTCAGCCTCATCCTCAGACTGGAGGCTGGAGATGGTGAGGTAGCGCTCAGCCCCAGAGCTGGAGCCTGAGAAGCGATCAGGGATCCCGTCCCCCTTGATGTGGCTGCCATCACTCTTAACCGTCATCAAGTAGCGAGGGCCCTTCTCTGGCTGCTGCTGATGCCATGCGATGGCGTAGCTGCTGTGCTCACT
+QUALITY> 33.943333333333335
+
+     ID> M01873:M01873:000000000-B9G3J:1:1111:12286:7157
+    SEQ> CACGGCAGGGTCAGGGTTCTGGATATAGGACTTGACTCTCAGAATGGTTCCTGCGCCAAAGACCAGTTTGTTTCCATGCCCATCGGGGCTTGCTGCACAGAAGTAGACAGCCGAGTCTTCAGGTTGGGTCTCTGTGATGTGCAGGGAGAAATGTTTGGCTGTCTTGTTCAATGTAACAGCAATTCGTTGGTCTTTCTTTTCGCCCACATTTGAACGAATGTCTATAATAAGCTGAGGTCTTTTTCCAAGTTCTTGCTTATACCAAGGGAAGTAGTTTGAGGCACTGTCTGAATAAGTACA
+QUALITY> 36.916666666666664
+
+     ID> M01873:M01873:000000000-B9G3J:1:2116:17140:9378
+    SEQ> GGGTGCTGTCGAGGCTCAGCGGGAAGACCTTGGGGCTGGTCGGGGATGCTGAAGAGACGGTGACCACTGTCCCTTGGCCCCAGACATCAAAAGCAGGAGTGCGACCTGCTATAAAAGCCTCCTTCGCACAGAAATATACAGCCGTGTCTTCAGGTCTCAGGCTGTTCATTTCCAGAAACAGTGTGTTCTTGGAATTGTCTCTGGAGAGGGTGAACCGGCCCTTCACGGAGTCTCCGAAGGATTTGTAACTTCCATCATAGAAGATAACTGACACCCAGTCCCGCCCCTTCCTTGGACCTG
+QUALITY> 31.756666666666668
+
+     ID> M01873:M01873:000000000-B9G3J:1:2105:17710:2946
+    SEQ> TGTCTGCACCCTGGCCCCTCCGCCGAAAGTGAAAGGTGAGCTACCATACTGCTGACAGTAATACACTGCAAAATCTTCAGGCTCCAGTCTGCTGATGGTGAGAGTGAAGTCTGTCCCAGACCCACTGCCACTGAACCTGTCTGGGATGCCAGTGGCCCTGCTGGATGCAGCAAAGATGAGGAGCCTGGGAGCCTGGCCAGGTTCCTGCTGGTACCAGGCTAAGCCGCTGCTGCTAACACTCTGACTGGCCCTGCAGGAGCGGGTGGCGCTTTGCCCTGGATACAACGACATGAGCACTGG
+QUALITY> 27.796666666666667
+
+     ID> M01873:M01873:000000000-B9G3J:1:2106:21507:14943
+    SEQ> CGACCTCGGGTGGGAACAGAGTGACCGAGGGGGCAGCCTTGGGCTGACCTAGGACGGTCAGCTTGGTCCCTCCGCCGAATACTCCGAAAGTGTAGCTGCCTGCATATGAGAAGCAGTAATAATCAGCCTCATCTTCAGCCT
+QUALITY> 37.737588652482266
+