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comparison pretext_map.xml @ 6:dfb8a4497339 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pretext commit 174b5928ab85f3faa4e8c7528dc50e27562f5be0"
author iuc
date Fri, 04 Feb 2022 21:24:37 +0000
parents 2b16ba799da9
children 511e5e3cd55e
comparison
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5:2b16ba799da9 6:dfb8a4497339
1 <tool id="pretext_map" name="PretextMap" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.01"> 1 <tool id="pretext_map" name="PretextMap" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.01">
2 <description>converts SAM or BAM files into genome contact maps</description> 2 <description>converts SAM or BAM files into genome contact maps</description>
3 <macros> 3 <macros>
4 <token name="@TOOL_VERSION@">0.1.8</token> 4 <token name="@TOOL_VERSION@">0.1.9</token>
5 <token name="@VERSION_SUFFIX@">2</token> 5 <token name="@VERSION_SUFFIX@">0</token>
6 </macros> 6 </macros>
7 <requirements> 7 <requirements>
8 <requirement type="package" version="@TOOL_VERSION@">pretextmap</requirement> 8 <requirement type="package" version="@TOOL_VERSION@">pretextmap</requirement>
9 <requirement type="package" version="1.13">samtools</requirement> 9 <requirement type="package" version="1.14">samtools</requirement>
10 </requirements> 10 </requirements>
11 <version_command>PretextMap --version</version_command> 11 <version_command>PretextMap --version</version_command>
12 <command detect_errors="exit_code"><![CDATA[ 12 <command detect_errors="exit_code"><![CDATA[
13 #if $input.is_of_type("bam"): 13 #if $input.is_of_type("bam"):
14 samtools view -h '${input}' | 14 samtools view -h '${input}' |