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comparison progressivemauve.xml @ 1:bca52822843e draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/progressivemauve commit e0cd7ae10ce97bed51594e7cc0b969a803d698b7
author iuc
date Fri, 07 Sep 2018 11:30:11 -0400
parents 74093fb62bdf
children bdb752f3c6bb
comparison
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0:74093fb62bdf 1:bca52822843e
189 <change_format> 189 <change_format>
190 <when input="mums" value="--mums" format="tabular" /> 190 <when input="mums" value="--mums" format="tabular" />
191 </change_format> 191 </change_format>
192 </data> 192 </data>
193 <data format="nhx" name="output_guide_tree_file" label="${tool.name} alignment of ${on_string}: Guide tree"> 193 <data format="nhx" name="output_guide_tree_file" label="${tool.name} alignment of ${on_string}: Guide tree">
194 <when>output_guide_tree</when> 194 <filter>output_guide_tree</filter>
195 </data> 195 </data>
196 <data format="tabular" name="output_backbone_file" label="${tool.name} alignment of ${on_string}: Backbone"> 196 <data format="tabular" name="output_backbone_file" label="${tool.name} alignment of ${on_string}: Backbone">
197 <when>output_backbone</when> 197 <filter>output_guide_tree</filter>
198 </data> 198 </data>
199 </outputs> 199 </outputs>
200 <tests> 200 <tests>
201 <test> 201 <test>
202 <param name="sequences" value="phagey.fa,karma.fa" /> 202 <param name="sequences" value="phagey.fa,karma.fa" />
203 <output name="output" file="1.xmfa" lines_diff="20"/> 203 <output name="output" file="1.xmfa" lines_diff="20"/>
204 </test> 204 </test>
205 <test> 205 <test>
206 <param name="sequences" value="merged.fa" /> 206 <param name="sequences" value="merged.fa" />
207 <output name="output" file="1.xmfa" lines_diff="20"/> 207 <output name="output" file="2.xmfa" lines_diff="20"/>
208 </test> 208 </test>
209 <test> 209 <test>
210 <param name="sequences" value="merged.fa" /> 210 <param name="sequences" value="merged.fa" />
211 <param name="output_guide_tree" value="True" /> 211 <param name="output_guide_tree" value="True" />
212 <output name="output" file="1.xmfa" lines_diff="20"/> 212 <output name="output" file="2.xmfa" lines_diff="20"/>
213 <output name="output_guide_tree_file" file="1.nhx" /> 213 <output name="output_guide_tree_file" file="1.nhx" />
214 </test> 214 </test>
215 <test> 215 <test>
216 <param name="sequences" value="merged.fa" /> 216 <param name="sequences" value="merged.fa" />
217 <param name="mums" value="True" /> 217 <param name="mums" value="True" />
218 <output name="output" file="1.mums" compare="sim_size" delta="1000"/> 218 <output name="output" file="1.mums" compare="sim_size" delta="1000"/>
219 </test> 219 </test>
220 <test> 220 <test>
221 <param name="sequences" value="merged.fa" /> 221 <param name="sequences" value="merged.fa" />
222 <param name="match_input" value="1.mums" /> 222 <param name="match_input" value="1.mums" />
223 <output name="output" file="1.xmfa" lines_diff="24"/> 223 <output name="output" file="2.xmfa" lines_diff="24"/>
224 </test> 224 </test>
225 </tests> 225 </tests>
226 <help><![CDATA[ 226 <help><![CDATA[
227 What it does 227 What it does
228 ============ 228 ============