--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/karma.fa	Wed Aug 17 14:46:55 2016 -0400
@@ -0,0 +1,3699 @@
+>karma
+gggctctgggcgaagttttgtgggactactatgacttgcattatttcaagcgcaagcggt
+ccgagtggaagtaccaaagatttgctttggtttatcaacaacttgccgacgcggcctcgg
+acacctccatcgcgtccaagtttcagacctacgatcacctgccccacctggagccgaagg
+tgctcaaggcccggcttgacgcgggtcacgccgacgagcgcgggcggccgattccggacc
+gcaaggagcacttccggcgggtggtggtcagcgtcgactcggccaacaagcccggcgccc
+gcaacgactacagcgtcgcccaggtctggggggagacccacgcccgcaagcactacctga
+tctaccaggagcgcaagaaggtcgacatcaccggcctgaccgagatgatcgagcgggtgg
+ccaagcgctacgaggtcgacgccatcctggtcgaagacaagggcaacggcaccgcctaca
+tccaggcgcggggccagaccgacagccagcggcggctcgccccggccccgatcgaggcga
+tccaggtcccgagcacctattccaaggagttccgcttcaacgagatcgtcccgatgatcg
+aggccggcgaggtcttcctgccgggcaaggccccgtggctcgacctgctgatccgcgaaa
+tcggtcagttccccgaaggcgcccatgacgaccaagtcgacgccatgacgcagtacctcc
+gctgggccaagtccaagcgcacgcggttcggcgcgcgcaaggtcggctcgatgggctgac
+gaggcccgttaaccacgtttgttaacctccgccggggccttaaccctaacacggcgaggg
+ttaacaggtccagggacccttcgaaattaacctttcggggaccctgggaaatcgtaaggc
+agggaccctggccattttccggctggggaccctggcaaattcaccgccggggaccctccg
+aaattcatcctcggggaccctggcaaatcaaggagccggcgatggccgaatttctcgccc
+tgatccccaacctcgcgccgttcctggtctggggaatcctcctctggatcgccgccgagg
+tggtctggagcgtctgcctctgggtctatggcctgcggaccctgttcaagttgcaccgcg
+atgatctggccgaggcgatcagcttcgagcgggccttgagccccttcgactaggcgcggc
+ctgccgacctaagtcacggactgtaggtttcgtgacaaggtgagatattccacaacgatt
+tcaaaggcttactgcgatgtcgatccgcacgttcttccacgatctggccgtccgtttcgt
+cgttttggggtggatttttgcccgaaaaccgctgaaatgggctccaaaagggcataattt
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+gcgccggccgcaggctatgtcatagaccgtgggcttcgtgaccagatcacgcttccgtta
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+gcccgctctaaagcgtcatatctgacgcctaaggccccctaaggcctcatctgtgagaca
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+gccgccgagccctggggcgatttaccaccgccacgttaacctaacgcctgttaacctatc
+ggttgttaaggttaacgccccgttagggttaacgccccttaaccctgcccgcgttaaggt
+taacgcgccccggcccaggccctacccgttaaccttaaccgcccgacccccgcgcccagg
+ccatacccggtagggcctgacggccctaccgggtatgaccccgcgccccggcggaggcca
+gggaccgccccggcgctttttcgcgccccgtttaccttttgttaacgtctggcctctagg
+gtcgcccttgtccccgccgcactcccgcgccgggcaaggagcttcccgccatggtccccg
+actcgatcatgaacccccgcgaccacttccaccgcctgcgcgaggaaaccgcccgcgctc
+tggtcgaggccttcgccgaatccgaccccggcgaggattaccgcgccgaggaaaaggccg
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+cttcgccccctggcgccgcgttaacggtttgttaacatgtcggcgccagggtcgccctag
+cccggcgcgtcgccgcgccttcggagaaaaccgccatgctctacacccccgccgcccgcc
+gccttcgcggctatcgcgaaaccgccgcgaagaacgccgaaattcacgcccgcccgcaca
+tggccggcaacgtcgccggctacaacgagtcggtgtggccgacgacggcgctaggcgtcg
+ccgccaaggccggcgccttcaagcgccccgaaaccgccggcaactggtcggaggatcgca
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+gactttcgccgccgggcaatcccgcccgccggaccctctttcaaggattgctcccgtcat
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+ggccgaagccaaggccaagcgtgacgccgaaaaggccgccaaggcgcgccgcgaagccga
+acggctcgccgacgccgaagccttcgccgcttggatgcgcggcgagcgccagagcgcccc
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+ccgcgacctgcgcagccaagagcgcgacggctcgcgcgtcgatgaactgcaaacctcgca
+aggcgcggccgtgccgtgggaacacgcggtcaaggccttccggttcatcaagctttgccg
+cgaacgcggcgagagcttccaccgcaacggccgggtgattcgcgtcggacacttccaagt
+tgacgcgatcagcccgaacggggacatgacggccggttgtcaccggttcgcgtgggatga
+aatcgaacgcctcgccagggccgaaggggttttcgacctccccgccgacgctggcgccgt
+cgaaacccggcaagccgaaccggcctaagcctccccgcccctctcgcgccccggctcccc
+gccggggcgttttcgtgtacgcggtaaccttttgttaacttctggcctctagggtgactt
+tcgccgccgggcaatcccgcccgccggccaaggatcgcagactatgaatcttttcgttgt
+cgccattgaccccgccctcatcccttcggccgccggcttcgtggtcgcctccccctacgg
+gtgcggcaagtggcgcgcgtgcgtcgggagcgaggcggacatgatcgcgcttcgcgacaa
+gatgcgccgcgcgcacccggccccggaaggctacagcgtccagcccctggcgtcgttcct
+ggcctatctggagacggtcggggatagcccttatgaccggttccgcgcccatgacgccgc
+cgcccgcatccttgacaccctgacgacgcatctcgccgcctagccccgccaagcccccgg
+ccgcgcgccgggggcgctttccctcgaaaggatcgccgaccatgacaacccgtcttatcg
+ccgttcgcggcccgaccgccgccgaactcgccgacccgtccagccgcgcgggcggcgccg
+aagtcgttttcgagcgccgcgaccgcgaaggccgcacgcgccttgtgttcgcctcgacct
+gctacggctcatatcagcaatggggcgaaacccgcgacgtgctcgccgacaacgtcgagg
+cggtcacgctctgggccgaaggcatggcggccgttgccgccctcatcgacgagagcgacg
+acgacgacgagagcgacgacgccccggccgaagatgacgacggggaggcgtgagccatgc
+gcacaaccaaggctcaacgcttcgccgccatcgcctttgacgccctggccaaggccctaa
+gcgagccgcgccaagccgtcgcccgcgtgaccaaatgggagggcgcgggccatagcttcg
+ccaacctgcaacgcgattatgagcggtacggccccggcgcccgctcatggttcggccggg
+ctgaaatgcgcttctttgggacgcgcctagaggccgcgccgctggatttcccggcgctgg
+gctgcaccctctttctgacctccgaaaccccgcccggcgccggccgggtctggacccttc
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+cggcgaccgcgcaagcggcctttgacctgctttggcgggtcctttccggacagtaacctt
+ttgttaacttctgcccgctagggtcttcttgcggccgggcaatcccgcccggccgcatct
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+tccccatggggcgcggcgcccaagagtggatgcgcgcgcgccgcgaagccgtcgccagct
+acagcgacgacaaggccgacgccctggccaccgcccgcgacatgtccgcccgctgggagg
+cgatgagcgccgaagagcgttcgcgcctctatcacaaccccgcctaagaccccgcgcgcc
+gccctggccttcgccggggcggctccctcaacccctcgcaaggatcgcaccccatgaccg
+cccgtaagcccctgaccaaggaacaaaaggcccgccgccgcgcgacccgccgcgccgccc
+gcctcaactggtcggatgagcgccgcgctcgcgaattcgagcgtcaagcccgcttcttcc
+tgatgatcgccacccgcgcccaaggcgccggccaaggccaggaagccgcccgcctcgcca
+cggtcgcacaacgcaaggtgactaactggcgcatggcgcaggcctgcgcccggattaacg
+ccctggccgcgcatccgttcgcggccgtggtcgcctaaggaggcccgcccgatgacgcac
+cctcacgccctggcgctgatcgccctcgccgaaaaggtgttaccgcttacccggctgcac
+ccgctcgaccaacgcgccgccgccgtcgatctaatcggcgacctctaccgcctcgccgac
+gatatcgacgcgaccccgcaagcccccgccctgacgcaaccgaaggccgcctaagccatg
+aacccgaaccgctaccgcctcgcgccccgcgaccgcttcagccgtgagcttgccgaaacg
+ctctatcaggcggccgaagccgtcgcccgcgtgattccgctcatgccggagtccgccccc
+gatgagcgccgcgcgctgggcaaggtccgcgccgaccttctaacccatagcgccggcgcc
+cttgttcccaagccgccggccgccgtgctcgaaaccctcgtttgggttgtcgagatggcg
+caagatcgcgcgactaacgccgatttcaacaccgcccaagaaggactcgacgagcacgag
+tccctagcctttgtcgccgactggctggaagccgaaggccaggacgtgacgccgattcgc
+aacgcgcaaccgtccgccgacgccctggccgaactcgccgcccgccgcgacgccgaacaa
+gcggcgctagacgccttggaggccgaagccctggccgaagcgccgggcgacgtgatcacc
+gacgccttgcgcccctatctgggcgccgccctggccgaaaaccacgccgacgacgtgcta
+gacgccctcacgcgcgccggcttccaaatcacccgcaaggaggcctaaagcccatgaccg
+actccgccaagatcaccggcgcgctcgcgctactcgccatcgcggccgataatctccgcc
+aaggcccggccatgtccaaggccgccgacaacgtcaccaacgtctgtaactacgccctga
+cgcgcgcgaccatgctcaaggccgccgaccaaatcggcgaggcgctggaggcgctgggcg
+ccctgcaagcgggcggctatgtgatcgcccgccgccgcgacgttttcaccgatgcgggcg
+agaagctgggcgacctgttggcggcgctttatgacgccgtcccgaactacgccgtaagat
+cgcagcgcctcgccgacgccctgagtcccgcgcgaaattacgtctatcagccccggttcc
+gggtcaagctggacgccgcgcccggcgcgcttttgaccgactgcgacacgggcgcaacgg
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+acgccgccaacgtgacggccgaaggcgcggccctggcctcgatgatgaacccgaccgccg
+aagagtatttcagccccgccacgggggtctaacgcccgtggccctgaccttcgccccgca
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+ggaaattctagcccctggcccctatctggagccgtcgcttagcgagcgtttggaggcgca
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+actggccaaggccaaggcgtggaagcgccagcccgcctaagtcatcattcctatcgtcta
+tgacttgtcaccggccgaactcttgcccggtgacagtctgggcaagtaaagctcactctg
+gattttatgacttagcgcaaaggattgaaattgctcgaaaaattcctcgaagctcacaaa
+gttgttttctggctgcttttgctggcctgtttgtggcgcttttaacggtttgttaacccc
+tggccctctagggtcgaattcccggcgcggcaatcccgccgcccggccttccttcggagc
+ttctgatcatgttcgcttccgtgacccttcccgcccatgacgcccaaggcctgagcctcg
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+cccccgtggtcgaaagctggcgcgacgaggacaccggcgccgaccacgcgcaagccgccg
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+gccggctggaaaacctcgccgcgcgctatgccgccgactgcgacgccccggccctgactg
+tcacccactgcgacggccaaacggtctatgtcggcgctctggaagccctggcgcgccccg
+ccccggtgcaaggcccgacccgtgaggcggacccggctttcctcccccgccagcgtgagg
+acaaggccgcccgcttcgatcgcctgaccgcctagcccctggcctccccctagcgcaccg
+cccctagaaaggcggtgcgcttttctgtgtctgtttacttgttgttaaggaatagcctgc
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+accctgcaaggcggcgccgtccgccgcgctctgggcgcctatgccgccgccctaaaggtc
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+ggaggtcgcaaggagacacccgacatgacccgccccggccccgcctcgctcctgaccccg
+caagcccgcttctcgtcgccgcgcgtcctgatccttccgggcgcggctcccatgccgatt
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+gcgctctacctcgccgcccgcgtgttcggtctggtctgaccagacccccgccccgccccc
+ggtcggaccggtcgggggtgtgtcccataatgacacacccccgccacctagtatcttttt
+tgattcggagggacccaaaggccccctacgttaaccatttttggcggcgccccccggcgc
+ctacggatcattttgaaaaatcgcgttgacaaaaccggcaatcaacgtcaaggatcgtga
+cgtcgagcagccctgcccgacacgggcggcccgccccccattcgccgcccgacggcccca
+tctccgacgtccaccgggggtggggccttttcattttccagccgggggacccaaggcccc
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+agggccgcgtcaccaccgccatctatgacgcccaggaacgcttcaccgaggccgaagccc
+agtcggcgctcgacttcaacggcgagccccgcgacagccgtcaccgcttcttcgacttcg
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+aggcccagaaaaaggccgacgagttcgccgcgaccgaagcgcgcgccctcctcttggtcc
+gcgccctgaaaaacgtcatgggcggctcggagaccatcccccgcgaggagttctatcgcc
+gctacggcggcaagccgagcgtcatgtacgccgccgacgcccaggatcgcccctatttcg
+actacgcgttcaaccgcgaccacaccattgtcaccgtccggccggacgagggcggcgagg
+ccctctacgcccgcgacgccgtcccggcctgatcccatgagcgacgaacgcggccccggc
+cacaccaagttctacgcctccgaggacggcaagcacgtcatgcgctgcctgaacaacgac
+ccggcctgggtcagtccggtcgtccatgacgaggcgccgctgccggcctggaagatcgcc
+tcgatgttgcaggacgcctataatctcggcaagcgcgagcagcaggagatcatccgccgc
+gcccttggagttcccggacgatgaccgaactgacccttggcgagcgctatgcgcgggagg
+ccctggcggtcgccctgtttggccagcgccgcacgtcctcgtcgatcggcggcgcgccgg
+cctcgctctggcacgagatcgcgccccagcagcgcggaagctggcgcgagcaggccgatc
+gcctcgtcgccgagcaggccggggacgccacggccgtcaccaaggaccagaagcgcaagc
+tggagcgctgggaaggcgaactgctcgccctggccagcggcctggacccggacggctatc
+acgacgccaaggaccaccgcgctgagcgcgatatcgcctcctactaccaggagatgcagc
+cctacgactacaagctctccaacgaggtgctgctgaacgcccactcgcacgccgacgccc
+tcggcctggacctcccggcgtttccggccaactatttctcgtcccaagcggtcgagtcgg
+tcaggacacggcaactgaccgactgggaagcggccatgatggcgatcctacatggcgagg
+ccgagatcaccgcctccaactggtcgagctacaagttcatcgtgccgttccagtatcgct
+tctctgacaagcagatcgtggagatcgccctgaaggcccaatccttcgacggcgtcccgg
+caagatcgccggccgaccgtcgccgctacaaggtggaaaccctctgatgcgccgcttttc
+tatcctgaccctcacggccgccgcgatcgccctgggctgcgtcgccagtctcaccgcctg
+cgccgagcagaccaaggtggacgatcaggtctacgccacgctggagaacggctgcgtcgt
+ccacaagatcgtccgccaggagaagggcagcatgttcatcgaggaggtctacaccaccgt
+ctgcccgaacggggcgacccggacggagtgggagacgaccaagatggtcggcaagacggt
+gaccgtcgaaaagcacgccaccgaaaccccggcgacgcgctaatgaccgccgccctgacc
+ctctcgcgccgcttcacccccaccgacctctccggggcgatgaagatggtcgccccttac
+ggcatcctggccgatccccgcgccgccagcctcgccgcctccatggggttcgcctcgggc
+gacgcccggcacgaagacaccatcctgggcctcaaggtcctgctgttcaagaacgtcccg
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+tttctgatcctcggccgcgccgcccacacccggttcatcgcccgccgggccgaggcctgg
+ggctggcgcgagcagtacgatccgatgttcgccacgcccgagaactactgcgccctgcgc
+gaccagttccaggccgacttccccgagcgccactttggtgggacccacggactgaacaag
+cagggcctcgccgatctcctggcccgcgacgacgtcttggacgtccagttccacgtcccc
+gccgccccggccgacgccattgtggctgaaattgactgaaggtagacatgaaatccccca
+gcacgcctgaagaaaaggcgctcgaagccgcgcgcaaggcgcggaccgacgctgccgtgg
+cggcgttcacctcgatcgagcgctacgacgcctacgtcaaggctcagttcgacaaggacc
+tgaaggcgggcctgtggggtggctacaactatgccacggcggagccccgcaaacctgtgt
+cgtgggagcaggtgcgcgcctactacgttcgtaatttcctctatcatctcgatcacctct
+gcttgatgttcgggttggagccggccgaaatcatcgcgcgcctggagggagcatgagcgt
+caactaccatatcgagcgcgccgtccgggcgccggagaaaggcttcgtccaggtccgcca
+catcgggcagtgggccaacggccgtttcctctttcagggcgcgaccttccggaccacgcg
+ggcgtggcgcgaccatctccggaccctgacggacgacgagcgcatcgtcagcgagaacgg
+cgtggtcatgagcccgagcgagttctggaacatggtcggtcagaccctggccaacgacac
+cacgctcgactacgctttgaacgtcgcccagggctttgagcaatacagcctcgcgcgcgg
+cttcctggagggtcgcttctggatggacggtcccttcgccttcaccagcaacgagttcca
+ttgatgcccggatttttcgcccgcctgctttaccggatcgccggcgtcgccccgattagc
+acgccgaagaccgccgccctggtcgcggcggtctggtggacgacccggatgaatatcgag
+gcggccgtcgaccccggcacgagcgacgccgaaaagctccaactggccgacgccttccag
+gacgagctttgccggctgatcgacgggcgcctgcggcggatcggcaagcgttccgagggg
+ctgtcgatcgacttcgactacacgcccgacccgctgctggccgaggccttgcgcaaggcc
+ggcgtctcccgcagcgtctggagcgacctgtggctcaacaagacccgcatggtcgtccag
+tcccaccagatcagcgtcaagcccggactggccgggcagcgctacaccatccccatcgga
+gaggtctgatgccctactaccgcaagaagcccgtcgtgatcgaggccatcaccttcgacg
+aactcgtccagcatggccttcaggagaaggacgccggacggggctcagccgtcaagggcg
+ttccctggacgttcctctacaagggccagccgatcacccacgagaacgacgacacctaca
+tcatcccgaccctggagggctcgatggcctttcggcgtggcgacatgctcatcaccggcg
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+cctagtatcttttttgattcggagggacccaaaggccccctacgttaaccatttttggcg
+gcgccccc