Mercurial > repos > iuc > proteinortho_grab_proteins

comparison proteinortho_grab_proteins.xml @ 5:a87f7278b4ee draft

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planemo upload for repository https://gitlab.com/paulklemm_PHD/proteinortho commit 84c463c8317d7c16c2b86b1d8657932cc0f39791
author iuc
date Tue, 22 Nov 2022 16:51:10 +0000
parents 85ffb2cc6b64
children b183a90fe278
comparison
equal deleted inserted replaced
4:d5e4450964f8 5:a87f7278b4ee
16 #end if 16 #end if
17 mkdir output && cd output && 17 mkdir output && cd output &&
18 proteinortho_grab_proteins.pl 18 proteinortho_grab_proteins.pl
19 --tofiles 19 --tofiles
20 #if $regex: 20 #if $regex:
21 $regex 21 '$regex'
22 #end if 22 #end if
23 #if $source: 23 $source
24 $source
25 #end if
26 #if $query.querytype == "string": 24 #if $query.querytype == "string":
27 '$query.querystring' 25 '$query.querystring'
28 #else: 26 #else:
29 ../query 27 ../query
30 #end if 28 #end if
39 <option value="string" selected="true">String</option> 37 <option value="string" selected="true">String</option>
40 <option value="file">orthology-groups output file</option> 38 <option value="file">orthology-groups output file</option>
41 </param> 39 </param>
42 <when value="string"> 40 <when value="string">
43 <param name="querystring" type="text" label="A string of the protein/gene name/identifier that you want to search"> 41 <param name="querystring" type="text" label="A string of the protein/gene name/identifier that you want to search">
42 <validator type="regex" negate="true" message="Identifier must not end with a backslash">.*\\$</validator>
44 <sanitizer invalid_char=""> 43 <sanitizer invalid_char="">
45 <valid initial="string.letters,string.digits"> 44 <valid initial="string.letters,string.digits">
46 <add value="!"/> 45 <add value="!"/>
47 <add value="="/> 46 <add value="="/>
48 <add value="-"/> 47 <add value="-"/>