Mercurial > repos > iuc > psiclass

annotate test-data/test01_annotation_sample0.gtf @ 0:1b690aa060f6 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/psiclass commit 2dc6baaeb2d595cbd8d8ffe3bf22b199a0ba23e4
author iuc
date Tue, 26 Sep 2023 16:51:18 +0000
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1b690aa060f6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/psiclass commit 2dc6baaeb2d595cbd8d8ffe3bf22b199a0ba23e4
iuc
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diff changeset
1 #PsiCLASS_v1.0.3
1b690aa060f6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/psiclass commit 2dc6baaeb2d595cbd8d8ffe3bf22b199a0ba23e4
iuc
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diff changeset
2 #/home/laptop/miniconda3/envs/mulled-v1-4549fe7ad5b22a1b35ab5aa0ada6322e374f13375e517a18654c3ddd9bb8d124/bin/classes -p 1 -c 0.05 --stranded un --maxDpConstraintSize 7 -b bam_0.bam -b bam_1.bam -s ./subexon/psiclass_subexon_combined.out -o ./psiclass
1b690aa060f6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/psiclass commit 2dc6baaeb2d595cbd8d8ffe3bf22b199a0ba23e4
iuc
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diff changeset
3 #bam_0.bam
1b690aa060f6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/psiclass commit 2dc6baaeb2d595cbd8d8ffe3bf22b199a0ba23e4
iuc
parents:
diff changeset
4 chr16 PsiCLASS transcript 784996 786471 1000 . . gene_id "chr16.1"; transcript_id "chr16.1.0"; FPKM "90057.137790"; TPM "395522.152415"; cov "33.028455";
1b690aa060f6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/psiclass commit 2dc6baaeb2d595cbd8d8ffe3bf22b199a0ba23e4
iuc
parents:
diff changeset
5 chr16 PsiCLASS exon 784996 786471 1000 . . gene_id "chr16.1"; transcript_id "chr16.1.0"; exon_number "1"; FPKM "90057.137790"; TPM "395522.152415"; cov "33.028455";
1b690aa060f6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/psiclass commit 2dc6baaeb2d595cbd8d8ffe3bf22b199a0ba23e4
iuc
parents:
diff changeset
6 chr16 PsiCLASS transcript 787203 787744 1000 . . gene_id "chr16.7"; transcript_id "chr16.7.0"; FPKM "14337.566689"; TPM "62969.192406"; cov "5.258303";
1b690aa060f6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/psiclass commit 2dc6baaeb2d595cbd8d8ffe3bf22b199a0ba23e4
iuc
parents:
diff changeset
7 chr16 PsiCLASS exon 787203 787744 1000 . . gene_id "chr16.7"; transcript_id "chr16.7.0"; exon_number "1"; FPKM "14337.566689"; TPM "62969.192406"; cov "5.258303";
1b690aa060f6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/psiclass commit 2dc6baaeb2d595cbd8d8ffe3bf22b199a0ba23e4
iuc
parents:
diff changeset
8 chr16 PsiCLASS transcript 790525 792347 1000 . . gene_id "chr16.17"; transcript_id "chr16.17.0"; FPKM "19967.535928"; TPM "87695.467370"; cov "7.323094";
1b690aa060f6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/psiclass commit 2dc6baaeb2d595cbd8d8ffe3bf22b199a0ba23e4
iuc
parents:
diff changeset
9 chr16 PsiCLASS exon 790525 792347 1000 . . gene_id "chr16.17"; transcript_id "chr16.17.0"; exon_number "1"; FPKM "19967.535928"; TPM "87695.467370"; cov "7.323094";
1b690aa060f6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/psiclass commit 2dc6baaeb2d595cbd8d8ffe3bf22b199a0ba23e4
iuc
parents:
diff changeset
10 chr16 PsiCLASS transcript 794054 794361 1000 . . gene_id "chr16.25"; transcript_id "chr16.25.0"; FPKM "10623.323507"; TPM "46656.599158"; cov "3.896104";
1b690aa060f6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/psiclass commit 2dc6baaeb2d595cbd8d8ffe3bf22b199a0ba23e4
iuc
parents:
diff changeset
11 chr16 PsiCLASS exon 794054 794361 1000 . . gene_id "chr16.25"; transcript_id "chr16.25.0"; exon_number "1"; FPKM "10623.323507"; TPM "46656.599158"; cov "3.896104";
1b690aa060f6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/psiclass commit 2dc6baaeb2d595cbd8d8ffe3bf22b199a0ba23e4
iuc
parents:
diff changeset
12 chr16 PsiCLASS transcript 795132 795356 1000 . . gene_id "chr16.27"; transcript_id "chr16.27.0"; FPKM "30902.067712"; TPM "135718.862884"; cov "11.333333";
1b690aa060f6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/psiclass commit 2dc6baaeb2d595cbd8d8ffe3bf22b199a0ba23e4
iuc
parents:
diff changeset
13 chr16 PsiCLASS exon 795132 795356 1000 . . gene_id "chr16.27"; transcript_id "chr16.27.0"; exon_number "1"; FPKM "30902.067712"; TPM "135718.862884"; cov "11.333333";
1b690aa060f6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/psiclass commit 2dc6baaeb2d595cbd8d8ffe3bf22b199a0ba23e4
iuc
parents:
diff changeset
14 chr16 PsiCLASS transcript 797839 798063 1000 . . gene_id "chr16.39"; transcript_id "chr16.39.0"; FPKM "61804.135424"; TPM "271437.725768"; cov "22.666667";
1b690aa060f6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/psiclass commit 2dc6baaeb2d595cbd8d8ffe3bf22b199a0ba23e4
iuc
parents:
diff changeset
15 chr16 PsiCLASS exon 797839 798063 1000 . . gene_id "chr16.39"; transcript_id "chr16.39.0"; exon_number "1"; FPKM "61804.135424"; TPM "271437.725768"; cov "22.666667";