Mercurial > repos > iuc > psiclass
diff test-data/test03_annotation_sample0.gtf @ 0:1b690aa060f6 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/psiclass commit 2dc6baaeb2d595cbd8d8ffe3bf22b199a0ba23e4
| author | iuc |
|---|---|
| date | Tue, 26 Sep 2023 16:51:18 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test03_annotation_sample0.gtf Tue Sep 26 16:51:18 2023 +0000 @@ -0,0 +1,67 @@ +#PsiCLASS_v1.0.3 +#/home/laptop/miniconda3/envs/mulled-v1-4549fe7ad5b22a1b35ab5aa0ada6322e374f13375e517a18654c3ddd9bb8d124/bin/classes -p 1 -c 0.05 --maxDpConstraintSize 7 -b bam_0.bam -s ./subexon/psiclass_subexon_combined.out -o ./psiclass +#bam_0.bam +chr16 PsiCLASS transcript 784996 788300 1000 - . gene_id "chr16.0"; transcript_id "chr16.0.0"; FPKM "80537.900652"; TPM "473533.236461"; cov "29.537275"; +chr16 PsiCLASS exon 784996 786377 1000 - . gene_id "chr16.0"; transcript_id "chr16.0.0"; exon_number "1"; FPKM "80537.900652"; TPM "473533.236461"; cov "29.537275"; +chr16 PsiCLASS exon 786827 786928 1000 - . gene_id "chr16.0"; transcript_id "chr16.0.0"; exon_number "2"; FPKM "80537.900652"; TPM "473533.236461"; cov "29.537275"; +chr16 PsiCLASS exon 787077 787179 1000 - . gene_id "chr16.0"; transcript_id "chr16.0.0"; exon_number "3"; FPKM "80537.900652"; TPM "473533.236461"; cov "29.537275"; +chr16 PsiCLASS exon 787354 787477 1000 - . gene_id "chr16.0"; transcript_id "chr16.0.0"; exon_number "4"; FPKM "80537.900652"; TPM "473533.236461"; cov "29.537275"; +chr16 PsiCLASS exon 787556 787744 1000 - . gene_id "chr16.0"; transcript_id "chr16.0.0"; exon_number "5"; FPKM "80537.900652"; TPM "473533.236461"; cov "29.537275"; +chr16 PsiCLASS exon 788256 788300 1000 - . gene_id "chr16.0"; transcript_id "chr16.0.0"; exon_number "6"; FPKM "80537.900652"; TPM "473533.236461"; cov "29.537275"; +chr16 PsiCLASS transcript 789075 798063 1000 + . gene_id "chr16.3"; transcript_id "chr16.3.0"; FPKM "18742.007264"; TPM "110196.109976"; cov "6.873631"; +chr16 PsiCLASS exon 789075 789125 1000 + . gene_id "chr16.3"; transcript_id "chr16.3.0"; exon_number "1"; FPKM "18742.007264"; TPM "110196.109976"; cov "6.873631"; +chr16 PsiCLASS exon 789210 789360 1000 + . gene_id "chr16.3"; transcript_id "chr16.3.0"; exon_number "2"; FPKM "18742.007264"; TPM "110196.109976"; cov "6.873631"; +chr16 PsiCLASS exon 789547 789715 1000 + . gene_id "chr16.3"; transcript_id "chr16.3.0"; exon_number "3"; FPKM "18742.007264"; TPM "110196.109976"; cov "6.873631"; +chr16 PsiCLASS exon 790177 790269 1000 + . gene_id "chr16.3"; transcript_id "chr16.3.0"; exon_number "4"; FPKM "18742.007264"; TPM "110196.109976"; cov "6.873631"; +chr16 PsiCLASS exon 790347 790399 1000 + . gene_id "chr16.3"; transcript_id "chr16.3.0"; exon_number "5"; FPKM "18742.007264"; TPM "110196.109976"; cov "6.873631"; +chr16 PsiCLASS exon 790525 792347 1000 + . gene_id "chr16.3"; transcript_id "chr16.3.0"; exon_number "6"; FPKM "18742.007264"; TPM "110196.109976"; cov "6.873631"; +chr16 PsiCLASS exon 792439 792590 1000 + . gene_id "chr16.3"; transcript_id "chr16.3.0"; exon_number "7"; FPKM "18742.007264"; TPM "110196.109976"; cov "6.873631"; +chr16 PsiCLASS exon 792718 792811 1000 + . gene_id "chr16.3"; transcript_id "chr16.3.0"; exon_number "8"; FPKM "18742.007264"; TPM "110196.109976"; cov "6.873631"; +chr16 PsiCLASS exon 792966 793064 1000 + . gene_id "chr16.3"; transcript_id "chr16.3.0"; exon_number "9"; FPKM "18742.007264"; TPM "110196.109976"; cov "6.873631"; +chr16 PsiCLASS exon 793144 793274 1000 + . gene_id "chr16.3"; transcript_id "chr16.3.0"; exon_number "10"; FPKM "18742.007264"; TPM "110196.109976"; cov "6.873631"; +chr16 PsiCLASS exon 794054 794201 1000 + . gene_id "chr16.3"; transcript_id "chr16.3.0"; exon_number "11"; FPKM "18742.007264"; TPM "110196.109976"; cov "6.873631"; +chr16 PsiCLASS exon 795132 795356 1000 + . gene_id "chr16.3"; transcript_id "chr16.3.0"; exon_number "12"; FPKM "18742.007264"; TPM "110196.109976"; cov "6.873631"; +chr16 PsiCLASS exon 795685 795834 1000 + . gene_id "chr16.3"; transcript_id "chr16.3.0"; exon_number "13"; FPKM "18742.007264"; TPM "110196.109976"; cov "6.873631"; +chr16 PsiCLASS exon 795947 796077 1000 + . gene_id "chr16.3"; transcript_id "chr16.3.0"; exon_number "14"; FPKM "18742.007264"; TPM "110196.109976"; cov "6.873631"; +chr16 PsiCLASS exon 796717 796861 1000 + . gene_id "chr16.3"; transcript_id "chr16.3.0"; exon_number "15"; FPKM "18742.007264"; TPM "110196.109976"; cov "6.873631"; +chr16 PsiCLASS exon 796961 797092 1000 + . gene_id "chr16.3"; transcript_id "chr16.3.0"; exon_number "16"; FPKM "18742.007264"; TPM "110196.109976"; cov "6.873631"; +chr16 PsiCLASS exon 797694 797751 1000 + . gene_id "chr16.3"; transcript_id "chr16.3.0"; exon_number "17"; FPKM "18742.007264"; TPM "110196.109976"; cov "6.873631"; +chr16 PsiCLASS exon 797839 798063 1000 + . gene_id "chr16.3"; transcript_id "chr16.3.0"; exon_number "18"; FPKM "18742.007264"; TPM "110196.109976"; cov "6.873631"; +chr16 PsiCLASS transcript 789075 798063 1000 + . gene_id "chr16.3"; transcript_id "chr16.3.1"; FPKM "37403.744328"; TPM "219920.260694"; cov "13.717823"; +chr16 PsiCLASS exon 789075 789125 1000 + . gene_id "chr16.3"; transcript_id "chr16.3.1"; exon_number "1"; FPKM "37403.744328"; TPM "219920.260694"; cov "13.717823"; +chr16 PsiCLASS exon 789210 789360 1000 + . gene_id "chr16.3"; transcript_id "chr16.3.1"; exon_number "2"; FPKM "37403.744328"; TPM "219920.260694"; cov "13.717823"; +chr16 PsiCLASS exon 789547 789715 1000 + . gene_id "chr16.3"; transcript_id "chr16.3.1"; exon_number "3"; FPKM "37403.744328"; TPM "219920.260694"; cov "13.717823"; +chr16 PsiCLASS exon 790177 790269 1000 + . gene_id "chr16.3"; transcript_id "chr16.3.1"; exon_number "4"; FPKM "37403.744328"; TPM "219920.260694"; cov "13.717823"; +chr16 PsiCLASS exon 790347 790399 1000 + . gene_id "chr16.3"; transcript_id "chr16.3.1"; exon_number "5"; FPKM "37403.744328"; TPM "219920.260694"; cov "13.717823"; +chr16 PsiCLASS exon 790525 790666 1000 + . gene_id "chr16.3"; transcript_id "chr16.3.1"; exon_number "6"; FPKM "37403.744328"; TPM "219920.260694"; cov "13.717823"; +chr16 PsiCLASS exon 791161 791370 1000 + . gene_id "chr16.3"; transcript_id "chr16.3.1"; exon_number "7"; FPKM "37403.744328"; TPM "219920.260694"; cov "13.717823"; +chr16 PsiCLASS exon 791851 791948 1000 + . gene_id "chr16.3"; transcript_id "chr16.3.1"; exon_number "8"; FPKM "37403.744328"; TPM "219920.260694"; cov "13.717823"; +chr16 PsiCLASS exon 792224 792347 1000 + . gene_id "chr16.3"; transcript_id "chr16.3.1"; exon_number "9"; FPKM "37403.744328"; TPM "219920.260694"; cov "13.717823"; +chr16 PsiCLASS exon 792439 792590 1000 + . gene_id "chr16.3"; transcript_id "chr16.3.1"; exon_number "10"; FPKM "37403.744328"; TPM "219920.260694"; cov "13.717823"; +chr16 PsiCLASS exon 792718 792811 1000 + . gene_id "chr16.3"; transcript_id "chr16.3.1"; exon_number "11"; FPKM "37403.744328"; TPM "219920.260694"; cov "13.717823"; +chr16 PsiCLASS exon 792966 793064 1000 + . gene_id "chr16.3"; transcript_id "chr16.3.1"; exon_number "12"; FPKM "37403.744328"; TPM "219920.260694"; cov "13.717823"; +chr16 PsiCLASS exon 793144 793274 1000 + . gene_id "chr16.3"; transcript_id "chr16.3.1"; exon_number "13"; FPKM "37403.744328"; TPM "219920.260694"; cov "13.717823"; +chr16 PsiCLASS exon 794054 794201 1000 + . gene_id "chr16.3"; transcript_id "chr16.3.1"; exon_number "14"; FPKM "37403.744328"; TPM "219920.260694"; cov "13.717823"; +chr16 PsiCLASS exon 795132 795356 1000 + . gene_id "chr16.3"; transcript_id "chr16.3.1"; exon_number "15"; FPKM "37403.744328"; TPM "219920.260694"; cov "13.717823"; +chr16 PsiCLASS exon 795685 795834 1000 + . gene_id "chr16.3"; transcript_id "chr16.3.1"; exon_number "16"; FPKM "37403.744328"; TPM "219920.260694"; cov "13.717823"; +chr16 PsiCLASS exon 795947 796077 1000 + . gene_id "chr16.3"; transcript_id "chr16.3.1"; exon_number "17"; FPKM "37403.744328"; TPM "219920.260694"; cov "13.717823"; +chr16 PsiCLASS exon 796717 796861 1000 + . gene_id "chr16.3"; transcript_id "chr16.3.1"; exon_number "18"; FPKM "37403.744328"; TPM "219920.260694"; cov "13.717823"; +chr16 PsiCLASS exon 796961 797092 1000 + . gene_id "chr16.3"; transcript_id "chr16.3.1"; exon_number "19"; FPKM "37403.744328"; TPM "219920.260694"; cov "13.717823"; +chr16 PsiCLASS exon 797694 797751 1000 + . gene_id "chr16.3"; transcript_id "chr16.3.1"; exon_number "20"; FPKM "37403.744328"; TPM "219920.260694"; cov "13.717823"; +chr16 PsiCLASS exon 797839 798063 1000 + . gene_id "chr16.3"; transcript_id "chr16.3.1"; exon_number "21"; FPKM "37403.744328"; TPM "219920.260694"; cov "13.717823"; +chr16 PsiCLASS transcript 806296 806764 1000 . . gene_id "chr16.5"; transcript_id "chr16.5.0"; FPKM "10464.766439"; TPM "61528.978043"; cov "3.837953"; +chr16 PsiCLASS exon 806296 806764 1000 . . gene_id "chr16.5"; transcript_id "chr16.5.0"; exon_number "1"; FPKM "10464.766439"; TPM "61528.978043"; cov "3.837953"; +chr16 PsiCLASS transcript 854556 911018 1000 - . gene_id "chr16.6"; transcript_id "chr16.6.0"; FPKM "12954.686358"; TPM "76168.791447"; cov "4.751131"; +chr16 PsiCLASS exon 854556 854706 1000 - . gene_id "chr16.6"; transcript_id "chr16.6.0"; exon_number "1"; FPKM "12954.686358"; TPM "76168.791447"; cov "4.751131"; +chr16 PsiCLASS exon 868944 869056 1000 - . gene_id "chr16.6"; transcript_id "chr16.6.0"; exon_number "2"; FPKM "12954.686358"; TPM "76168.791447"; cov "4.751131"; +chr16 PsiCLASS exon 869883 870066 1000 - . gene_id "chr16.6"; transcript_id "chr16.6.0"; exon_number "3"; FPKM "12954.686358"; TPM "76168.791447"; cov "4.751131"; +chr16 PsiCLASS exon 870729 870882 1000 - . gene_id "chr16.6"; transcript_id "chr16.6.0"; exon_number "4"; FPKM "12954.686358"; TPM "76168.791447"; cov "4.751131"; +chr16 PsiCLASS exon 871161 871341 1000 - . gene_id "chr16.6"; transcript_id "chr16.6.0"; exon_number "5"; FPKM "12954.686358"; TPM "76168.791447"; cov "4.751131"; +chr16 PsiCLASS exon 879570 879737 1000 - . gene_id "chr16.6"; transcript_id "chr16.6.0"; exon_number "6"; FPKM "12954.686358"; TPM "76168.791447"; cov "4.751131"; +chr16 PsiCLASS exon 893007 893072 1000 - . gene_id "chr16.6"; transcript_id "chr16.6.0"; exon_number "7"; FPKM "12954.686358"; TPM "76168.791447"; cov "4.751131"; +chr16 PsiCLASS exon 910931 911018 1000 - . gene_id "chr16.6"; transcript_id "chr16.6.0"; exon_number "8"; FPKM "12954.686358"; TPM "76168.791447"; cov "4.751131"; +chr16 PsiCLASS transcript 934126 970856 1000 - . gene_id "chr16.7"; transcript_id "chr16.7.0"; FPKM "9975.559878"; TPM "58652.623379"; cov "3.658537"; +chr16 PsiCLASS exon 934126 934145 1000 - . gene_id "chr16.7"; transcript_id "chr16.7.0"; exon_number "1"; FPKM "9975.559878"; TPM "58652.623379"; cov "3.658537"; +chr16 PsiCLASS exon 934244 934254 1000 - . gene_id "chr16.7"; transcript_id "chr16.7.0"; exon_number "2"; FPKM "9975.559878"; TPM "58652.623379"; cov "3.658537"; +chr16 PsiCLASS exon 954357 954666 1000 - . gene_id "chr16.7"; transcript_id "chr16.7.0"; exon_number "3"; FPKM "9975.559878"; TPM "58652.623379"; cov "3.658537"; +chr16 PsiCLASS exon 970788 970856 1000 - . gene_id "chr16.7"; transcript_id "chr16.7.0"; exon_number "4"; FPKM "9975.559878"; TPM "58652.623379"; cov "3.658537";