Mercurial > repos > iuc > pygenometracks

diff macros.xml @ 8:4ac4e7083b7e draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 3bfe22506f7d9922ac885ef6a6fbe8f96c83ed14"
author iuc
date Tue, 21 Jul 2020 03:32:48 -0400
parents 326a3db8d9d1
children 2824d77cd8f8
line wrap: on
line diff
--- a/macros.xml	Fri Apr 17 11:57:44 2020 -0400
+++ b/macros.xml	Tue Jul 21 03:32:48 2020 -0400
@@ -1,6 +1,6 @@
 <macros>
     <token name="@THREADS@">\${GALAXY_SLOTS:-4}</token>
-    <token name="@WRAPPER_VERSION@">3.3</token>
+    <token name="@WRAPPER_VERSION@">3.5</token>
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="@WRAPPER_VERSION@">pygenometracks</requirement>
@@ -114,6 +114,43 @@
             <when value="fill_option" />
         </conditional>
     </xml>
+    <xml name="logScale_coverage_macro">
+        <conditional name="logScale_conditional">
+            <param name="transform_selector" type="select" label="Choose a transformation">
+                <option value="no">no transformation</option>
+                <option value="log1p">log1p</option>
+                <option value="log">log</option>
+                <option value="log2">log2</option>
+                <option value="log10">log10</option>
+                <option value="-log">-log</option>
+            </param>
+            <when value="no"/>
+            <when value="log1p">
+                <param name="y_axis_values" type="boolean" truevalue="original" falsevalue="transformed" checked="false"
+                label="Use original values instead of transformed values." />
+            </when>
+            <when value="log">
+                <param name="log_pseudocount" type="float"  value="0" label="pseudo count to add before applying log" />
+                <param name="y_axis_values" type="boolean" truevalue="original" falsevalue="transformed" checked="false"
+                label="Use original values instead of transformed values." />
+            </when>
+            <when value="log2">
+                <param name="log_pseudocount" type="float"  value="0" label="pseudo count to add before applying log2" />
+                <param name="y_axis_values" type="boolean" truevalue="original" falsevalue="transformed" checked="false"
+                label="Use original values instead of transformed values." />
+            </when>
+            <when value="log10">
+                <param name="log_pseudocount" type="float"  value="0" label="pseudo count to add before applying log10" />
+                <param name="y_axis_values" type="boolean" truevalue="original" falsevalue="transformed" checked="false"
+                label="Use original values instead of transformed values." />
+            </when>
+            <when value="-log">
+                <param name="log_pseudocount" type="float"  value="0" label="pseudo count to add before applying -log" />
+                <param name="y_axis_values" type="boolean" truevalue="original" falsevalue="transformed" checked="false"
+                label="Use original values instead of transformed values." />
+            </when>
+        </conditional>
+    </xml>
     <xml name="border_color_bed_macro">
         <conditional name="border_color_bed">
             <param name="border_color_bed_select" type="select" label="Define border color:">