Mercurial > repos > iuc > pygenometracks
diff pyGenomeTracks.xml @ 6:5cec5fb749f0 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d5b42c5571c64be9fcfe515e79210cbf4c75beaf"
| author | iuc |
|---|---|
| date | Tue, 11 Feb 2020 10:20:24 -0500 |
| parents | eca03db4f612 |
| children | 326a3db8d9d1 |
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--- a/pyGenomeTracks.xml Wed Jan 08 09:15:19 2020 -0500 +++ b/pyGenomeTracks.xml Tue Feb 11 10:20:24 2020 -0500 @@ -67,10 +67,10 @@ #if $track.track_file_style_conditional.colormap: colormap = $track.track_file_style_conditional.colormap #end if - #if $track.track_file_style_conditional.min_value: + #if $track.track_file_style_conditional.min_value != "": min_value = $track.track_file_style_conditional.min_value #end if - #if $track.track_file_style_conditional.max_value: + #if $track.track_file_style_conditional.max_value != "": max_value = $track.track_file_style_conditional.max_value #end if transform = $track.track_file_style_conditional.transform @@ -212,10 +212,10 @@ #if $track.track_file_style_conditional.height: height = $track.track_file_style_conditional.height #end if - #if $track.track_file_style_conditional.min_value: + #if $track.track_file_style_conditional.min_value != "": min_value = $track.track_file_style_conditional.min_value #end if - #if $track.track_file_style_conditional.max_value: + #if $track.track_file_style_conditional.max_value != "": max_value = $track.track_file_style_conditional.max_value #end if color = $track.track_file_style_conditional.color_link.color @@ -253,10 +253,10 @@ #if $track.track_file_style_conditional.display.width_adjust: width_adjust = $track.track_file_style_conditional.display.width_adjust #end if - #if $track.track_file_style_conditional.display.min_value: + #if $track.track_file_style_conditional.display.min_value != "": min_value = $track.track_file_style_conditional.display.min_value #end if - #if $track.track_file_style_conditional.display.max_value: + #if $track.track_file_style_conditional.display.max_value != "": max_value = $track.track_file_style_conditional.display.max_value #end if #end if @@ -300,10 +300,10 @@ #if $track.track_file_style_conditional.height_bedgraph: height = $track.track_file_style_conditional.height_bedgraph #end if - #if $track.track_file_style_conditional.min_value: + #if $track.track_file_style_conditional.min_value != "": min_value = $track.track_file_style_conditional.min_value #end if - #if $track.track_file_style_conditional.max_value: + #if $track.track_file_style_conditional.max_value != "": max_value = $track.track_file_style_conditional.max_value #end if show_data_range = $track.track_file_style_conditional.show_data @@ -352,10 +352,10 @@ #if $track.track_file_style_conditional.color_negative.color_negative_select == "true": negative_color = $track.track_file_style_conditional.color_negative.color #end if - #if $track.track_file_style_conditional.min_value: + #if $track.track_file_style_conditional.min_value != "": min_value = $track.track_file_style_conditional.min_value #end if - #if $track.track_file_style_conditional.max_value: + #if $track.track_file_style_conditional.max_value != "": max_value = $track.track_file_style_conditional.max_value #end if height = $track.track_file_style_conditional.height_bigwig @@ -398,10 +398,10 @@ #if $track.track_file_style_conditional.height_bedgraph: height = $track.track_file_style_conditional.height_bedgraph #end if - #if $track.track_file_style_conditional.min_value: + #if $track.track_file_style_conditional.min_value != "": min_value = $track.track_file_style_conditional.min_value #end if - #if $track.track_file_style_conditional.max_value: + #if $track.track_file_style_conditional.max_value != "": max_value = $track.track_file_style_conditional.max_value #end if #if $track.track_file_style_conditional.type_lines: @@ -438,10 +438,10 @@ #if $track.track_file_style_conditional.height: height = $track.track_file_style_conditional.height #end if - #if $track.track_file_style_conditional.min_value: + #if $track.track_file_style_conditional.min_value != "": min_value = $track.track_file_style_conditional.min_value #end if - #if $track.track_file_style_conditional.max_value: + #if $track.track_file_style_conditional.max_value != "": max_value = $track.track_file_style_conditional.max_value #end if y_values = $track.track_file_style_conditional.y_values @@ -519,7 +519,7 @@ <param name="height_matrix" type="float" value="" optional="True" label="height"/> <param name="show_masked_bins" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Show masked bins" /> - <param name="boundaries_file" type="data" optional="True" format="bed" label="Boundaries file" multiple="True"/> + <param name="boundaries_file" type="data" optional="True" format="bed" label="Boundaries file" multiple="True"/> <param name="scale_factor" type="float" value="1.0" optional="True" label="Scale factor" help="if the values in the matrix need to be scaled the following parameter can be used" /> <param name="rasterize" type="boolean" truevalue="true" falsevalue="false" checked="true" label="Rasterize the heatmap" /> @@ -554,7 +554,7 @@ <option value="triangles">triangles (plot triangles between start and end)</option> </param> <param name="arrowhead_included" type="boolean" truevalue="true" falsevalue="false" checked="false" - label="Include the arrowhead in the bed interval:" + label="Include the arrowhead in the bed interval:" help="When set to False, the arrow indicating the orientation of the interval is plotted outside of the interval."/> <param name="fontsize" type="integer" value="" optional="True" label="Fontsize" /> <expand macro="bed_advanced_macro" /> @@ -572,13 +572,13 @@ <option value="arcs" selected="True">arcs (a line between the centers of the 2 regions)</option> <option value="triangles">triangles</option> <option value="loops">loops (a rectangle highlighting the intersection)</option> - </param> + </param> <param name="height" type="float" value="1.5" optional="True" label="height"/> <expand macro="minmax_macro" /> <expand macro="overlay_macro" /> <expand macro="inverted_macro" /> <expand macro="spacer_macro" /> - </when> + </when> <when value="narrow_peak_track_option"> <expand macro="plot_title" /> <expand macro="track_input_narrow_peak_macro" /> @@ -594,7 +594,7 @@ optional="True" label="Use summit information to make the curve." /> <param name="show_data" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Show visualization of data range" /> - <param name="width_adjust" type="float" value="1.5" optional="True" + <param name="width_adjust" type="float" value="1.5" optional="True" label="Factor to change the width of the curve."/> <expand macro="minmax_macro" /> </when> @@ -680,7 +680,7 @@ <param name="show_data" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Show visualization of data range"/> <expand macro="inverted_macro" /> <expand macro="overlay_macro" /> - <expand macro="spacer_macro" /> + <expand macro="spacer_macro" /> </when> <when value="spacer_option"> <param name="spacer_height" type="float" value="" optional="True"