Mercurial > repos > iuc > pygenometracks
diff test-data/test17.ini @ 11:7dd841a32245 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit df07890f27c5d18e423ec889eadca82bd7958def
| author | iuc |
|---|---|
| date | Sat, 01 Oct 2022 08:43:22 +0000 |
| parents | 4ac4e7083b7e |
| children |
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--- a/test-data/test17.ini Sun Feb 13 22:43:45 2022 +0000 +++ b/test-data/test17.ini Sat Oct 01 08:43:22 2022 +0000 @@ -1,67 +1,129 @@ -[test bedgraph] +[bedgraph_0] file = GSM3182416_E12DHL_WT_Hoxd11vp.bedgraph.gz -color = blue -height = 5 title = bedgraph color = blue transform = no -transform = no - -[test bedgraph] +color = blue +alpha = 1.0 +height = 5.0 +show_data_range = true +grid = false +nans_to_zeros = false +use_middle = false +file_type = bedgraph +type = fill +overlay_previous = no +[bedgraph_1] file = GSM3182416_E12DHL_WT_Hoxd11vp.bedgraph.gz +title = bedgraph color = blue transform = log color = blue -height = 5 -title = bedgraph color = blue transform = log +alpha = 1.0 +height = 5.0 +show_data_range = true +grid = false +nans_to_zeros = false +use_middle = false +file_type = bedgraph +type = fill transform = log - -[test bedgraph] +y_axis_values = transformed +log_pseudocount = 0.0 +overlay_previous = no +[bedgraph_2] file = GSM3182416_E12DHL_WT_Hoxd11vp.bedgraph.gz +title = bedgraph color = red transform = log min_value = 1 color = red -height = 5 -title = bedgraph color = red transform = log min_value = 1 -min_value = 1 +alpha = 1.0 +height = 5.0 +min_value = 1.0 +show_data_range = true +grid = false +nans_to_zeros = false +use_middle = false +file_type = bedgraph +type = fill transform = log - -[test bedgraph] +y_axis_values = transformed +log_pseudocount = 0.0 +overlay_previous = no +[bedgraph_3] file = GSM3182416_E12DHL_WT_Hoxd11vp.bedgraph.gz -color = green -height = 5 title = bedgraph color = green transform = log log_pseudocount = 2 min_value = 0 -transform = log -log_pseudocount = 2 -min_value = 0 - -[test bedgraph with operation] -file = GSM3182416_E12DHL_WT_Hoxd11vp.bedgraph.gz color = green -height = 5 -title = bedgraph color = green operation = log(2+file) min_value = 0.7 -operation = log(2+file) -min_value = 0.7 - -[test bedgraph] +alpha = 1.0 +height = 5.0 +min_value = 0.0 +show_data_range = true +grid = false +nans_to_zeros = false +use_middle = false +file_type = bedgraph +type = fill +transform = log +y_axis_values = transformed +log_pseudocount = 2.0 +overlay_previous = no +[bedgraph_4] file = GSM3182416_E12DHL_WT_Hoxd11vp.bedgraph.gz -color = black -height = 5 +title = bedgraph color = green operation = log(2+file) min_value = 0.7 +color = green +alpha = 1.0 +height = 5.0 +min_value = 0.7 +show_data_range = true +grid = false +nans_to_zeros = false +use_middle = false +file_type = bedgraph +type = fill +operation = log(2+file) +overlay_previous = no +[bedgraph_5] +file = GSM3182416_E12DHL_WT_Hoxd11vp.bedgraph.gz title = bedgraph color = black transform = log2 log_pseudocount = 1 min_value = 0 -transform = log2 -log_pseudocount = 1 -min_value = 0 - -[test bedgraph] -file = GSM3182416_E12DHL_WT_Hoxd11vp.bedgraph.gz color = black -height = 5 +alpha = 1.0 +height = 5.0 +min_value = 0.0 +show_data_range = true +grid = false +nans_to_zeros = false +use_middle = false +file_type = bedgraph +type = fill +transform = log2 +y_axis_values = transformed +log_pseudocount = 1.0 +overlay_previous = no +[bedgraph_6] +file = GSM3182416_E12DHL_WT_Hoxd11vp.bedgraph.gz title = bedgraph color = black operation = log2(1+file) min_value = 0 -operation = log2(1+file) -min_value = 0 - -[test bedgraph] -file = GSM3182416_E12DHL_WT_Hoxd11vp.bedgraph.gz color = black -height = 5 +alpha = 1.0 +height = 5.0 +min_value = 0.0 +show_data_range = true +grid = false +nans_to_zeros = false +use_middle = false +file_type = bedgraph +type = fill +operation = log2(1+file) +overlay_previous = no +[bedgraph_7] +file = GSM3182416_E12DHL_WT_Hoxd11vp.bedgraph.gz title = bedgraph color = black transform = log2 log_pseudocount = 1 min_value = 0 y_axis_values = original +color = black +alpha = 1.0 +height = 5.0 +min_value = 0.0 +show_data_range = true +grid = false +nans_to_zeros = false +use_middle = false +file_type = bedgraph +type = fill transform = log2 -log_pseudocount = 1 -min_value = 0 y_axis_values = original - -[x-axis] \ No newline at end of file +log_pseudocount = 1.0 +overlay_previous = no +[x-axis] +where = bottom \ No newline at end of file