Mercurial > repos > iuc > pygenometracks
view test-data/first.maf @ 15:36b848d5f3ec draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 7df009cda0bc57c6891fc5273b2440db6fcf5719
| author | iuc |
|---|---|
| date | Tue, 12 Mar 2024 10:28:03 +0000 |
| parents | 7dd841a32245 |
| children |
line wrap: on
line source
##maf version=1 a score=41100.0 s mm10.chr2 34705072 4 + 182113224 G-AAG s rn5.chr3 19096925 4 + 183740530 G-AAG i rn5.chr3 C 0 C 0 s hg19.chr9 13114691 4 - 141213431 G-ACA i hg19.chr9 I 195 I 6 a score=423183.0 s mm10.chr2 34705076 25 + 182113224 AGGTGGAGA-------ACTATAGAATTTGAAA s rn5.chr3 19096929 25 + 183740530 AGGCAGAGA-------ACTGTGGAGTTTGAAA i rn5.chr3 C 0 C 0 s hg19.chr9 13114701 25 - 141213431 AAATAAAAG-------GCTGTAAATCTTGAAG i hg19.chr9 I 6 C 0 a score=66158.0 s mm10.chr2 34705101 4 + 182113224 GTCT s rn5.chr3 19096954 4 + 183740530 GGCT i rn5.chr3 C 0 C 0 s hg19.chr9 13114726 4 - 141213431 TTCT i hg19.chr9 C 0 C 0 a score=387811.0 s mm10.chr2 34705105 18 + 182113224 AATATTGCTTTCA---GCAAA s rn5.chr3 19096958 18 + 183740530 AATATTGCTTTCA---GCAAA i rn5.chr3 C 0 C 0 s hg19.chr9 13114730 18 - 141213431 AACACTGCTCTCA---GCAAA i hg19.chr9 C 0 C 0 a score=10920.0 s mm10.chr2 34705123 1 + 182113224 T s rn5.chr3 19096976 1 + 183740530 T i rn5.chr3 C 0 C 0 s hg19.chr9 13114748 1 - 141213431 T i hg19.chr9 C 0 C 0 a score=-29032.0 s mm10.chr2 34705124 7 + 182113224 GTCTTGA--- s rn5.chr3 19096977 7 + 183740530 GTCCTAA--- i rn5.chr3 C 0 C 0 s hg19.chr9 13114749 2 - 141213431 -----AA--- i hg19.chr9 C 0 C 0 a score=-6898.0 s mm10.chr2 34705131 8 + 182113224 TTTA------AAAA s rn5.chr3 19096984 8 + 183740530 TTTT------AAAA i rn5.chr3 C 0 C 0 s hg19.chr9 13114751 8 - 141213431 CTTT------AAAA i hg19.chr9 C 0 I 1 a score=37882.0 s mm10.chr2 34705139 24 + 182113224 AAAAATCTATGAGTGAAATG---AATA s rn5.chr3 19096992 23 + 183740530 CGAATTC-ATGAATGAAATG---AATA i rn5.chr3 C 0 C 0 s hg19.chr9 13114760 24 - 141213431 AGATAAGTATGCAGAGGATG---GAAA i hg19.chr9 I 1 C 0 a score=2589.0 s mm10.chr2 34705163 1 + 182113224 T s rn5.chr3 19097015 1 + 183740530 T i rn5.chr3 C 0 C 0 s hg19.chr9 13114784 1 - 141213431 T i hg19.chr9 C 0 C 0 a score=-36380.0 s mm10.chr2 34705164 35 + 182113224 ATAATGCCATGAAAT--TGACTCTA-ATTTCT-AAATGT s rn5.chr3 19097016 30 + 183740530 ATAATGCCACG-AAT--TAACTCTA-ATTTCT-AA---- i rn5.chr3 C 0 C 0 s hg19.chr9 13114785 32 - 141213431 -TTCAAACATAAAA---AAATTATT-A-ATCT-AAATGT i hg19.chr9 C 0 C 0 a score=33050.0 s mm10.chr2 34705199 17 + 182113224 ACTA-TTTTA--GACTACAG s rn5.chr3 19097046 14 + 183740530 ---A-TCTTA--GACTACAG i rn5.chr3 C 0 C 0 s hg19.chr9 13114817 13 - 141213431 -----TTTTA--GTCTGAAG i hg19.chr9 C 0 I 3470 a score=548.0 s mm10.chr2 34705216 11 + 182113224 AACTCCCCCTC-- s rn5.chr3 19097060 11 + 183740530 AACCCCCACTC-- i rn5.chr3 C 0 C 0 a score=-4856.0 s mm10.chr2 34705227 6 + 182113224 CCCAAA- s rn5.chr3 19097071 6 + 183740530 CCAAAA- i rn5.chr3 C 0 C 0 a score=87104.0 s mm10.chr2 34705233 20 + 182113224 AGATAACCCTAACTAAGCAT s rn5.chr3 19097077 16 + 183740530 AGATACCC----CTAAGCAC i rn5.chr3 C 0 C 0 a score=1769.0 s mm10.chr2 34705253 1 + 182113224 G s rn5.chr3 19097093 1 + 183740530 G i rn5.chr3 C 0 C 0 a score=-7449.0 s mm10.chr2 34705254 3 + 182113224 TCT-- s rn5.chr3 19097094 3 + 183740530 TCT-- i rn5.chr3 C 0 C 0 a score=-9682.0 s mm10.chr2 34705257 3 + 182113224 TAA s rn5.chr3 19097097 3 + 183740530 TAA i rn5.chr3 C 0 C 0 a score=45039.0 s mm10.chr2 34705260 9 + 182113224 CACAACTAG s rn5.chr3 19097100 9 + 183740530 CACAATTAG i rn5.chr3 C 0 C 0 a score=4300.0 s mm10.chr2 34705269 1 + 182113224 A s rn5.chr3 19097109 1 + 183740530 A i rn5.chr3 C 0 C 0 a score=135112.0 s mm10.chr2 34705270 16 + 182113224 AA-T------ATTAAAATAG----GTA s rn5.chr3 19097110 16 + 183740530 AA-T------ATTAAAATAG----GTA i rn5.chr3 C 0 C 0 a score=171803.0 s mm10.chr2 34705286 14 + 182113224 AGTATACAGAGACT s rn5.chr3 19097126 14 + 183740530 AGTATAAAGATACC i rn5.chr3 C 0 C 0 a score=59500.0 s mm10.chr2 34705300 4 + 182113224 AAAA s rn5.chr3 19097140 4 + 183740530 AAAA i rn5.chr3 C 0 I 99 s hg19.chr9 13118300 4 - 141213431 ggac i hg19.chr9 I 3470 C 0 a score=26234.0 s mm10.chr2 34705304 2 + 182113224 CT s rn5.chr3 19097243 2 + 183740530 CT i rn5.chr3 I 99 C 0 s hg19.chr9 13118304 2 - 141213431 tt i hg19.chr9 C 0 C 0 a score=4664.0 s mm10.chr2 34705306 1 + 182113224 T s rn5.chr3 19097245 1 + 183740530 T i rn5.chr3 C 0 C 0 a score=10920.0 s mm10.chr2 34705307 1 + 182113224 T s rn5.chr3 19097246 1 + 183740530 T i rn5.chr3 C 0 C 0 s hg19.chr9 13118306 1 - 141213431 t i hg19.chr9 C 0 C 0 a score=10500.0 s mm10.chr2 34705308 1 + 182113224 C s rn5.chr3 19097247 1 + 183740530 C i rn5.chr3 C 0 C 0 s hg19.chr9 13118307 1 - 141213431 c i hg19.chr9 C 0 C 0 a score=1320.0 s mm10.chr2 34705309 14 + 182113224 TCCACTCACGGATT---- s rn5.chr3 19097248 14 + 183740530 TCCATTCATGGatt---- i rn5.chr3 C 0 C 0 s hg19.chr9 13118308 18 - 141213431 tctacacatggaattttt i hg19.chr9 C 0 C 0 a score=8456.0 s mm10.chr2 34705323 15 + 182113224 TCCTTATAACAGATT s rn5.chr3 19097262 15 + 183740530 tcattatgacagatt i rn5.chr3 C 0 C 0 s hg19.chr9 13118326 15 - 141213431 tcattatgactgaca i hg19.chr9 C 0 C 0 a score=352.0 s mm10.chr2 34705338 11 + 182113224 TCTAGAAGTAG--- s hg19.chr9 13118341 11 - 141213431 cctagaagtgg--- i hg19.chr9 C 0 C 0 a score=25195.0 s mm10.chr2 34705349 194 + 182113224 TTCT-------------------TTTTTTTCCCCGCCTtttttttgagacagggtttctctgtgtagatcttg-------gctgtcctggaactcact--ctgtagac-caggctggccttgaactcagaaatccgcctgcctctgcctctgcctctgcctcccaagtgctgggattaaaggcttgcagcaccactgcctggcCtttttt-------ttttttttaaaga a score=0.0 s mm10.chr2 34705543 173 + 182113224 tttattattatttatatgtaagtacactgtagctatcctcagacacaccagtagagggcatcagatgtcatttcagatggttgtaaaccaccatgtggttgctaggatttgaactcaggaccttcattagaacagtcagtgctcttaaccgctgaaccatctctccagccccC a score=1419.0 s mm10.chr2 34705716 5 + 182113224 TCTAG s rn5.chr3 19097277 5 + 183740530 tctag i rn5.chr3 C 0 C 0 a score=23757.0 s mm10.chr2 34705721 71 + 182113224 AAGTAGTTCTAACTGATCCAAATTTAGAATATGATCATCTAAGTCCCCAAGAACACATTGACAAGTTATGC s rn5.chr3 19097282 71 + 183740530 aagtagttctaactgaaccaaatttagaatatgaacatttaagtccccacgtacacactgacaagttatgc i rn5.chr3 C 0 I 271 s hg19.chr9 13118352 65 - 141213431 ------aactaacctgactaaatttagaatgtgaacatttaagaccttaaatagatactgacaaagtatgt i hg19.chr9 C 0 C 0 a score=1587.0 s mm10.chr2 34705792 4 + 182113224 CCCA s rn5.chr3 19097624 4 + 183740530 CCTG i rn5.chr3 I 271 C 0 s hg19.chr9 13118417 4 - 141213431 ccca i hg19.chr9 C 0 I 76 a score=1744.0 s mm10.chr2 34705796 49 + 182113224 CTTTGATTTTTAGGGCTTTGTTTT--GGTTGTTTTAGGATTTTTTTTTCTC s rn5.chr3 19097628 51 + 183740530 CTTTGTTTTGTAGGAttttgcttttgggttttttcttctcttttttctttc i rn5.chr3 C 0 C 0 a score=-3038.0 s mm10.chr2 34705845 83 + 182113224 CTTTTT----CTTTCGTttttggttttttggatcaggactcactatgtagact-tggctgacctagaactcactatgtagaccaggca s rn5.chr3 19097679 83 + 183740530 tttttt----gttttttttttttttttttggataaaggctcactctacagact-tggctgacttggaactcactatgtaagccaggca i rn5.chr3 C 0 C 0 a score=-8755.0 s mm10.chr2 34705928 42 + 182113224 agtctcaaactcatagatattccctg----gcctctatct---gagttc s rn5.chr3 19097762 45 + 183740530 aatcttaaactcacagataatcccct----gcctccacctcctgagtgc i rn5.chr3 C 0 C 0 a score=1299.0 s mm10.chr2 34705970 3 + 182113224 tga s rn5.chr3 19097807 3 + 183740530 tga i rn5.chr3 C 0 C 0 a score=-2713.0 s mm10.chr2 34705973 5 + 182113224 cattC s rn5.chr3 19097810 5 + 183740530 tacaa i rn5.chr3 C 0 C 0 a score=6695.0 s mm10.chr2 34705978 1 + 182113224 T s rn5.chr3 19097815 1 + 183740530 t i rn5.chr3 C 0 C 0 a score=395.0 s mm10.chr2 34705979 1 + 182113224 A s rn5.chr3 19097816 1 + 183740530 a i rn5.chr3 C 0 C 0 a score=28965.0 s mm10.chr2 34705980 8 + 182113224 TAATTACC s rn5.chr3 19097817 8 + 183740530 tgaTTACC i rn5.chr3 C 0 C 0 a score=12376.0 s mm10.chr2 34705988 1 + 182113224 T s rn5.chr3 19097825 1 + 183740530 T i rn5.chr3 C 0 C 0 a score=12907.0 s mm10.chr2 34705989 1 + 182113224 T s rn5.chr3 19097826 1 + 183740530 T i rn5.chr3 C 0 C 0 a score=258.0 s mm10.chr2 34705990 1 + 182113224 A s rn5.chr3 19097827 1 + 183740530 A i rn5.chr3 C 0 C 0 a score=29575.0 s mm10.chr2 34705991 1 + 182113224 A s rn5.chr3 19097828 1 + 183740530 A i rn5.chr3 C 0 C 0 a score=18893.0 s mm10.chr2 34705992 1 + 182113224 A s rn5.chr3 19097829 1 + 183740530 A i rn5.chr3 C 0 C 0 a score=395908.0 s mm10.chr2 34705993 19 + 182113224 A-------AGCCATTCT------CACTCCTAC s rn5.chr3 19097830 19 + 183740530 A-------GGTCATTCT------CACCCCCAC i rn5.chr3 C 0 C 0 s hg19.chr9 13118497 19 - 141213431 A-------AGTCATCCT------CATTTCCCC i hg19.chr9 I 76 C 0 s sorAra1.scaffold_258498 5366 18 + 196505 A-------AGCCcctct------ttttcca-t i sorAra1.scaffold_258498 N 0 C 0 a score=11678.0 s mm10.chr2 34706012 1 + 182113224 A s rn5.chr3 19097849 1 + 183740530 A i rn5.chr3 C 0 C 0 s hg19.chr9 13118516 1 - 141213431 C i hg19.chr9 C 0 C 0 s sorAra1.scaffold_258498 5384 1 + 196505 t i sorAra1.scaffold_258498 C 0 C 0 a score=41513.0 s mm10.chr2 34706013 1 + 182113224 A s rn5.chr3 19097850 1 + 183740530 A i rn5.chr3 C 0 C 0 s hg19.chr9 13118517 1 - 141213431 T i hg19.chr9 C 0 C 0 s sorAra1.scaffold_258498 5385 1 + 196505 t i sorAra1.scaffold_258498 C 0 C 0 a score=154000.0 s mm10.chr2 34706014 1 + 182113224 C s rn5.chr3 19097851 1 + 183740530 C i rn5.chr3 C 0 C 0 s hg19.chr9 13118518 1 - 141213431 C i hg19.chr9 C 0 C 0 s sorAra1.scaffold_258498 5386 1 + 196505 c i sorAra1.scaffold_258498 C 0 C 0 a score=98483.0 s mm10.chr2 34706015 1 + 182113224 T s rn5.chr3 19097852 1 + 183740530 T i rn5.chr3 C 0 C 0 s hg19.chr9 13118519 1 - 141213431 T i hg19.chr9 C 0 C 0 s sorAra1.scaffold_258498 5387 1 + 196505 t i sorAra1.scaffold_258498 C 0 C 0 a score=13020051.0 s mm10.chr2 34706016 111 + 182113224 T--ACCATGGGCTATGTCATCCATATCT--GGACTAGTTACA-GAATCTTTGCCCCC-AAAATCA-GAGCTGCACTCAGA-TCTCAGGTCTTCGATCTTATTGGGAATATCCTCCGATG s rn5.chr3 19097853 111 + 183740530 T--ACCATGGGCTATGTCATCCACATCT--GGACTAGTTACA-GAATCTTTACCCCC-AAAATCA-GAGCTGCACTCAGA-TCGCAGGTCTTCGATCTTATTGGGAATATCCTCCGATG i rn5.chr3 C 0 C 0 s hg19.chr9 13118520 111 - 141213431 T--ACCGTGAGTTATTTCATCCATGTCT--GGACTAGTGACA-GAATCTTTACCCCC-AAAATCA-GAGCTGCACTCAGA-TCTCAGGTCTTCAATCTTATTGGGAATATCCTCAGAGG i hg19.chr9 C 0 C 0 s sorAra1.scaffold_258498 5388 111 + 196505 t--accATGAGTTACTTCATCCATGTCT--GGGCTAGTGACA-GAGTCTTTACCCCC-AAAGTCA-GAGCTGCACTCAGA-TCTCAGGTCTTCTATCTTATTAGGAATATCCTCAGAGG i sorAra1.scaffold_258498 C 0 C 0 a score=1769347.0 s mm10.chr2 34706127 14 + 182113224 TAGCACTTATACCT s rn5.chr3 19097964 14 + 183740530 TAGCGCTTATGCCT i rn5.chr3 C 0 C 0 s hg19.chr9 13118631 14 - 141213431 TTGCACTTATGCCT i hg19.chr9 C 0 C 0 s sorAra1.scaffold_258498 5499 14 + 196505 TTGCACTTATgcct i sorAra1.scaffold_258498 C 0 C 0 a score=-78567.0 s mm10.chr2 34706141 7 + 182113224 TTAAA-------------------AA----- s rn5.chr3 19097978 7 + 183740530 TTGAA-------------------AA----- i rn5.chr3 C 0 C 0 s hg19.chr9 13118645 7 - 141213431 TTAAA-------------------AA----- i hg19.chr9 C 0 C 0 s sorAra1.scaffold_258498 5513 6 + 196505 tt-aa-------------------ag----- i sorAra1.scaffold_258498 C 0 C 0 a score=-435240.0 s mm10.chr2 34706148 8 + 182113224 ATACAGCA-------------------------------------- s rn5.chr3 19097985 7 + 183740530 -TACAGCA-------------------------------------- i rn5.chr3 C 0 C 0 s hg19.chr9 13118652 1 - 141213431 -------A-------------------------------------- i hg19.chr9 C 0 C 0 a score=-126692.0 s mm10.chr2 34706156 2 + 182113224 A-A- s rn5.chr3 19097992 2 + 183740530 A-A- i rn5.chr3 C 0 C 0 s hg19.chr9 13118653 2 - 141213431 C-A- i hg19.chr9 C 0 C 0 s sorAra1.scaffold_258498 5519 2 + 196505 a-t- i sorAra1.scaffold_258498 C 0 C 0 a score=-311071.0 s mm10.chr2 34706158 6 + 182113224 A-A----TACA-- s rn5.chr3 19097994 5 + 183740530 A------TACA-- i rn5.chr3 C 0 C 0 s hg19.chr9 13118655 3 - 141213431 A--------TA-- i hg19.chr9 C 0 C 0 s sorAra1.scaffold_258498 5521 3 + 196505 a--------aa-- i sorAra1.scaffold_258498 C 0 C 0 a score=-651211.0 s mm10.chr2 34706164 10 + 182113224 TA--A--G----------------------------------------------------------------------------------------------TAAA--TA s rn5.chr3 19097999 10 + 183740530 GA--A--G----------------------------------------------------------------------------------------------TAAA--TA i rn5.chr3 C 0 C 0 s hg19.chr9 13118658 10 - 141213431 GT--A--A----------------------------------------------------------------------------------------------AAAA--TA i hg19.chr9 C 0 C 0 s sorAra1.scaffold_258498 5524 12 + 196505 at--a--a--------------------------------------------------------------------------------------------ttaaaa--ct i sorAra1.scaffold_258498 C 0 C 0 a score=165149.0 s mm10.chr2 34706174 5 + 182113224 AATAA s rn5.chr3 19098009 4 + 183740530 AACA- i rn5.chr3 C 0 C 0 s hg19.chr9 13118668 4 - 141213431 AACA- i hg19.chr9 C 0 C 0 s sorAra1.scaffold_258498 5536 2 + 196505 a--a- i sorAra1.scaffold_258498 C 0 C 0 a score=386714.0 s mm10.chr2 34706179 12 + 182113224 GCTGCAAG----AAGA-------- s rn5.chr3 19098013 9 + 183740530 ---GCAAG----AAGA-------- i rn5.chr3 C 0 C 0 s hg19.chr9 13118672 9 - 141213431 ---GGAAG----AAGA-------- i hg19.chr9 C 0 C 0 s sorAra1.scaffold_258498 5538 13 + 196505 ---gcAAACTGGAACA-------- i sorAra1.scaffold_258498 C 0 C 0 a score=224266.0 s mm10.chr2 34706191 6 + 182113224 CCAAAG-- s rn5.chr3 19098022 6 + 183740530 ACAAAG-- i rn5.chr3 C 0 C 0 s hg19.chr9 13118681 6 - 141213431 ACAAAA-- i hg19.chr9 C 0 C 0 s sorAra1.scaffold_258498 5551 6 + 196505 ACAAAA-- i sorAra1.scaffold_258498 C 0 C 0 a score=584015.0 s mm10.chr2 34706197 35 + 182113224 TAGTTACAC-------AA---------------------------------------------------------------------------------A--ATTT--TATG---------AAG--TT-------------------------------T-GGAGAAA----------------------------------------------------TT-- s rn5.chr3 19098028 36 + 183740530 CAGTTACAC-------AA---------------------------------------------------------------------------------A--ATTC--TACT---------AAG--TT-------------------------------TTGGATAAA----------------------------------------------------TC-- i rn5.chr3 C 0 C 0 s hg19.chr9 13118687 36 - 141213431 TATCCACAC-A-----AA---------------------------------------------------------------------------------A--AGTA--TATG---------AAA--TT-------------------------------T-GGAGAAA----------------------------------------------------CT-- i hg19.chr9 C 0 I 4 s sorAra1.scaffold_258498 5557 36 + 196505 TAAGCACAC-A-----GA---------------------------------------------------------------------------------A--AGTT--TATG---------AAG--TC-------------------------------T-GGAGAAA----------------------------------------------------GT-- i sorAra1.scaffold_258498 C 0 I 4 a score=-1110372.0 s mm10.chr2 34706232 43 + 182113224 CCTTTTC-------------------------------------------------AAA---CT--A---TC--CAC-------------------------------------------------------------------------------------------------------------------------------------------------------------CTACAC------ATGTGA-GTTGCTGAGTGCT-------- s rn5.chr3 19098064 37 + 183740530 CCTCCTC-------------------------------------------------GAG---CT--G---TC--CAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGTGA-GCTGCCGAGTGCT-------- i rn5.chr3 C 0 C 0 s hg19.chr9 13118727 47 - 141213431 CATTCTC-------------------------------------------------GAA---TT--T---TG--T----------------------------GTCCCAGT--TC------------------------------------------------------------------------------------------------------------------------TATAC------ATGTGA----GTTTAGTATT-------- i hg19.chr9 I 4 C 0 s sorAra1.scaffold_258498 5597 51 + 196505 TACCCTC-------------------------------------------------AATT--GT--T---TG--T----------------------------GTCCAGTTC-TA------------------------------------------------------------------------------------------------------------------------CACAC------AAGGGA-GCTG-CCGGTGTT-------- i sorAra1.scaffold_258498 I 4 C 0 a score=-57305.0 s mm10.chr2 34706275 9 + 182113224 G-------------------GCAAGTTA s rn5.chr3 19098101 9 + 183740530 G-------------------CCACCTCA i rn5.chr3 C 0 C 0 a score=-785463.0 s mm10.chr2 34706284 23 + 182113224 CCAC--------------------------------------------------------------------------TGTTA----TTCAAACACACT----TA----------- s rn5.chr3 19098110 23 + 183740530 CCAC--------------------------------------------------------------------------TGCTG----TCCAAGTACACT----TA----------- i rn5.chr3 C 0 C 0 s hg19.chr9 13118774 35 - 141213431 -------------------------------------------------------ATATCCTT---TA-T-GGTA--CTACTG----CTTAAATATACT----TA----------- i hg19.chr9 C 0 C 0 s sorAra1.scaffold_258498 5648 36 + 196505 -------------------------------------------------------TCGGCTTT---TATC-AGTA--CTACTG----CTTAAATATGAT----TA----------- i sorAra1.scaffold_258498 C 0 C 0 a score=38342.0 s mm10.chr2 34706307 6 + 182113224 TCTTGC- s rn5.chr3 19098133 6 + 183740530 TCTTGC- i rn5.chr3 C 0 C 0 s hg19.chr9 13118809 6 - 141213431 CCTTGC- i hg19.chr9 C 0 C 0 s sorAra1.scaffold_258498 5684 5 + 196505 C-CCGA- i sorAra1.scaffold_258498 C 0 C 0 a score=173064.0 s mm10.chr2 34706313 10 + 182113224 T-TTATACAAT s rn5.chr3 19098139 8 + 183740530 T---ATACAGC i rn5.chr3 C 0 C 0 s hg19.chr9 13118815 10 - 141213431 T-TTACACAAC i hg19.chr9 C 0 C 0 s sorAra1.scaffold_258498 5689 7 + 196505 T-GTGTGC--- i sorAra1.scaffold_258498 C 0 C 0 a score=110922.0 s mm10.chr2 34706323 13 + 182113224 ATCATC------------------------------------------AGA---ATT-A s rn5.chr3 19098147 13 + 183740530 AGCATC------------------------------------------AAA---AGT-T i rn5.chr3 C 0 C 0 s hg19.chr9 13118825 13 - 141213431 ATAATC------------------------------------------AGA---ATC-G i hg19.chr9 C 0 C 0 s sorAra1.scaffold_258498 5696 12 + 196505 -AAAAT------------------------------------------ATC---CAA-G i sorAra1.scaffold_258498 C 0 I 1 a score=-155855.0 s mm10.chr2 34706336 16 + 182113224 CACGC----T----ATAC-----CTAAAT s rn5.chr3 19098160 15 + 183740530 CATGC----T----GTAC-----CTAA-T i rn5.chr3 C 0 C 0 s hg19.chr9 13118838 14 - 141213431 --TAC----A----ATTC-----TAAAGT i hg19.chr9 C 0 C 0 s sorAra1.scaffold_258498 5709 16 + 196505 TACAT----G----CTCT-----GTACAC i sorAra1.scaffold_258498 I 1 I 5 a score=5448.0 s mm10.chr2 34706352 3 + 182113224 ATC s rn5.chr3 19098175 3 + 183740530 ATT i rn5.chr3 C 0 C 0 a score=-7915.0 s mm10.chr2 34706355 2 + 182113224 GT- s rn5.chr3 19098178 2 + 183740530 GT- i rn5.chr3 C 0 C 0 a score=592160.0 s mm10.chr2 34706357 20 + 182113224 AGCAAAAGC-----TAT-CAAAAA----TA s rn5.chr3 19098180 20 + 183740530 AGCAGAAGC-----TAC-CAAAAG----TA i rn5.chr3 C 0 C 0 s hg19.chr9 13118852 20 - 141213431 AGGACAGGC-----TAC-TAAGAA----CA i hg19.chr9 C 0 C 0 s sorAra1.scaffold_258498 5730 20 + 196505 AGCAGAAGC-----TAT-GCAGTA----CA i sorAra1.scaffold_258498 I 5 C 0 a score=-246926.0 s mm10.chr2 34706377 6 + 182113224 TCA-----A--------GA s rn5.chr3 19098200 6 + 183740530 TCG-----A--------AA i rn5.chr3 C 0 C 0 s hg19.chr9 13118872 6 - 141213431 GAA-----A--------CA i hg19.chr9 C 0 C 0 s sorAra1.scaffold_258498 5750 4 + 196505 GAT-----A---------- i sorAra1.scaffold_258498 C 0 C 0 a score=-935672.0 s mm10.chr2 34706383 18 + 182113224 GCTG------------------AA--------AG---AGGAG-----------------------CAGCA s rn5.chr3 19098206 17 + 183740530 GCTG------------------AA---------G---AAGAA-----------------------CAGTT i rn5.chr3 C 0 C 0 s hg19.chr9 13118878 17 - 141213431 GTTG------------------TA---------G---AGAGA-----------------------CTGTT i hg19.chr9 C 0 C 0 s sorAra1.scaffold_258498 5754 20 + 196505 ----------------------GT---------C---AGGGAA---CA---CAC-----A-----TGAGC i sorAra1.scaffold_258498 C 0 C 0 a score=499767.0 s mm10.chr2 34706401 25 + 182113224 CGTCCA--TTATTTT----AACAGGCTGTA--A s rn5.chr3 19098223 23 + 183740530 CGTCAG--TTATC------AATAGGCTGTG--A i rn5.chr3 C 0 C 0 s hg19.chr9 13118895 26 - 141213431 TGCCAA--TTACTTC----AACAGGCTCCAT-A i hg19.chr9 C 0 C 0 s sorAra1.scaffold_258498 5774 26 + 196505 TGCAAA--TTACTTT----AATGAGCTCTGC-G i sorAra1.scaffold_258498 C 0 C 0 a score=767553.0 s mm10.chr2 34706426 54 + 182113224 A----AGC------CACATATT--AAGTT----CTCAAAGA----TTAT------------G-AAG-GCATAAAATTAAT-TTTTTTCC s rn5.chr3 19098246 54 + 183740530 A----AGC------TACACATT--AGGTT----CTCAAAGA----TTAT------------G-AAA-GCGTAAAATTGAT-TTTGTTCC i rn5.chr3 C 0 C 0 s hg19.chr9 13118921 55 - 141213431 A----GGC------CACACATT--AAGTT----CTCAAAGAT---TTCA------------G-GTG-CAATGGAAATAAG-TTTGTTTT i hg19.chr9 C 0 C 0 s sorAra1.scaffold_258498 5800 55 + 196505 A----AGC------CGCACATT--AAGCT----CTCATAGCT---ATTT------------G-GTA-CCCTAGAAATAAT-TTCATTCC i sorAra1.scaffold_258498 C 0 C 0 a score=512662.0 s mm10.chr2 34706480 12 + 182113224 CTGG-GGACTACT s rn5.chr3 19098300 12 + 183740530 CTGG-AGACTACT i rn5.chr3 C 0 C 0 s hg19.chr9 13118976 12 - 141213431 CTGG-AAATTACT i hg19.chr9 C 0 C 0 s sorAra1.scaffold_258498 5855 12 + 196505 CTGG-AAATCACC i sorAra1.scaffold_258498 C 0 C 0 a score=266794.0 s mm10.chr2 34706492 19 + 182113224 GAG-AACTTAAATAA-CATA--T s rn5.chr3 19098312 19 + 183740530 GAG-CTCTTAAATAA-CACA--T i rn5.chr3 C 0 C 0 s hg19.chr9 13118988 19 - 141213431 CAG-CTCTTAAATAT-AACA--T i hg19.chr9 C 0 I 2 s sorAra1.scaffold_258498 5867 1 + 196505 C---------------------- i sorAra1.scaffold_258498 C 0 C 0 a score=43661.0 s mm10.chr2 34706511 4 + 182113224 CT--CT s rn5.chr3 19098331 4 + 183740530 CT--CT i rn5.chr3 C 0 C 0 s hg19.chr9 13119009 4 - 141213431 CT--TT i hg19.chr9 I 2 C 0 a score=10868.0 s mm10.chr2 34706515 1 + 182113224 T s rn5.chr3 19098335 1 + 183740530 T i rn5.chr3 C 0 C 0 s hg19.chr9 13119013 1 - 141213431 T i hg19.chr9 C 0 C 0 a score=-67977.0 s mm10.chr2 34706516 23 + 182113224 gggggtggagatacagctcag----------------tg s rn5.chr3 19098336 23 + 183740530 ggggacaaagctacagctcag----------------tg i rn5.chr3 C 0 C 0 a score=-16667.0 s mm10.chr2 34706539 4 + 182113224 at---ga s rn5.chr3 19098359 5 + 183740530 ac--aga i rn5.chr3 C 0 C 0 a score=-47800.0 s mm10.chr2 34706543 9 + 182113224 acacatgac s rn5.chr3 19098364 9 + 183740530 gcacatgac i rn5.chr3 C 0 C 0 s sorAra1.scaffold_258498 5868 9 + 196505 GCTGGTAAT i sorAra1.scaffold_258498 C 0 C 0 a score=-120172.0 s mm10.chr2 34706552 20 + 182113224 taacatgtcccaagtt--------------------ctgg s rn5.chr3 19098373 20 + 183740530 taacatgtcccgagtt--------------------ctga i rn5.chr3 C 0 C 0 a score=-60366.0 s mm10.chr2 34706572 21 + 182113224 gttcaacagatagtacca-------------------------------------------------------tac s rn5.chr3 19098393 18 + 183740530 gttcaacagccagcacca---------------------------------------------------------- i rn5.chr3 C 0 C 0 s sorAra1.scaffold_258498 5877 5 + 196505 -------------TATCA---------------------------------------------------------- i sorAra1.scaffold_258498 C 0 C 0 a score=-3306.0 s mm10.chr2 34706593 3 + 182113224 cat-- a score=-199980.0 s mm10.chr2 34706596 23 + 182113224 aa------aacAGCCAACAAAACCC-AGTT-------------- s rn5.chr3 19098411 18 + 183740530 ----------gcagcaacaaaaCCC-AGT--------------- i rn5.chr3 C 0 C 0 s hg19.chr9 13119014 7 - 141213431 ------------------TGTATCA------------------- i hg19.chr9 C 0 C 0 a score=21021.0 s mm10.chr2 34706619 1 + 182113224 A s rn5.chr3 19098429 1 + 183740530 A i rn5.chr3 C 0 C 0 a score=28151.0 s mm10.chr2 34706620 3 + 182113224 TCT s rn5.chr3 19098430 3 + 183740530 TCT i rn5.chr3 C 0 C 0 a score=21179.0 s mm10.chr2 34706623 3 + 182113224 CTT- s rn5.chr3 19098433 3 + 183740530 CTT- i rn5.chr3 C 0 C 0 a score=-542671.0 s mm10.chr2 34706626 14 + 182113224 TGG-TAAC-----AC------------T--------TTAT-------- s rn5.chr3 19098436 14 + 183740530 TGG-TAAC-----AC------------T--------TTAT-------- i rn5.chr3 C 0 C 0 s hg19.chr9 13119021 7 - 141213431 -------------AC------------T--------TTAT-------- i hg19.chr9 C 0 C 0 s sorAra1.scaffold_258498 5882 7 + 196505 -------------AC------------A--------TTAT-------- i sorAra1.scaffold_258498 C 0 C 0 a score=-12000.0 s mm10.chr2 34706640 5 + 182113224 AAAC-A s rn5.chr3 19098450 5 + 183740530 AAAC-A i rn5.chr3 C 0 C 0 s hg19.chr9 13119028 5 - 141213431 AAAT-A i hg19.chr9 C 0 C 0 s sorAra1.scaffold_258498 5889 5 + 196505 ACAC-G i sorAra1.scaffold_258498 C 0 C 0 a score=112347.0 s mm10.chr2 34706645 2 + 182113224 GA s rn5.chr3 19098455 2 + 183740530 GA i rn5.chr3 C 0 C 0 s hg19.chr9 13119033 2 - 141213431 GG i hg19.chr9 C 0 I 7 s sorAra1.scaffold_258498 5894 2 + 196505 GG i sorAra1.scaffold_258498 C 0 C 0 a score=-75428.0 s mm10.chr2 34706647 10 + 182113224 AAGA-AGGGGA s rn5.chr3 19098457 10 + 183740530 AAGA-AGGGGA i rn5.chr3 C 0 C 0 s hg19.chr9 13119042 10 - 141213431 AGGG-GGTGAA i hg19.chr9 I 7 C 0 s sorAra1.scaffold_258498 5896 10 + 196505 GTGG-TAGGAA i sorAra1.scaffold_258498 C 0 C 0 a score=26690.0 s mm10.chr2 34706657 1 + 182113224 T s rn5.chr3 19098467 1 + 183740530 T i rn5.chr3 C 0 C 0 s hg19.chr9 13119052 1 - 141213431 C i hg19.chr9 C 0 C 0 s sorAra1.scaffold_258498 5906 1 + 196505 C i sorAra1.scaffold_258498 C 0 I 2 a score=582929.0 s mm10.chr2 34706658 21 + 182113224 GCCTTCAAA--------------------TTCCTAGC----CCTT s rn5.chr3 19098468 21 + 183740530 GCCTTCAAA--------------------TTCCTAGT----CCTT i rn5.chr3 C 0 C 0 s hg19.chr9 13119053 21 - 141213431 ACCTTCAAA--------------------TCCCTACT----CCTT i hg19.chr9 C 0 C 0 s sorAra1.scaffold_258498 5909 21 + 196505 ACCTTCCAA--------------------TCCTTATT----CCTT i sorAra1.scaffold_258498 I 2 C 0 a score=357258.0 s mm10.chr2 34706679 6 + 182113224 AAAAC---------------------------------A--- s rn5.chr3 19098489 6 + 183740530 AAAAC---------------------------------A--- i rn5.chr3 C 0 C 0 s hg19.chr9 13119074 6 - 141213431 AAAAC---------------------------------A--- i hg19.chr9 C 0 C 0 s sorAra1.scaffold_258498 5930 6 + 196505 AAAAC---------------------------------A--- i sorAra1.scaffold_258498 C 0 C 0 a score=522064.0 s mm10.chr2 34706685 8 + 182113224 AGA-C-AGAC s rn5.chr3 19098495 8 + 183740530 AGA-C-AGAC i rn5.chr3 C 0 C 0 s hg19.chr9 13119080 8 - 141213431 AGA-C-AGAC i hg19.chr9 C 0 C 0 s sorAra1.scaffold_258498 5936 8 + 196505 AGA-C-AGAC i sorAra1.scaffold_258498 C 0 C 0 a score=75873.0 s mm10.chr2 34706693 1 + 182113224 A s rn5.chr3 19098503 1 + 183740530 A i rn5.chr3 C 0 C 0 s hg19.chr9 13119088 1 - 141213431 A i hg19.chr9 C 0 C 0 s sorAra1.scaffold_258498 5944 1 + 196505 A i sorAra1.scaffold_258498 C 0 C 0 a score=117040.0 s mm10.chr2 34706694 1 + 182113224 T s rn5.chr3 19098504 1 + 183740530 T i rn5.chr3 C 0 C 0 s hg19.chr9 13119089 1 - 141213431 T i hg19.chr9 C 0 C 0 s sorAra1.scaffold_258498 5945 1 + 196505 T i sorAra1.scaffold_258498 C 0 C 0 a score=18601995.0 s mm10.chr2 34706695 141 + 182113224 A-CCGGACACAAC-ACTGAGG--CCTGGT-GTGC-TGGGGC-GGGAA--CTGACCTCCCTGAC-ATCCGTATCATCA-GATGTGCTG-CCCAGTCCAGAACAG---CTCT-CCAGCTCTTGGAGGCGCTCTTCCTGCTTTAAGTCTGGAGCCTCTGA s rn5.chr3 19098505 141 + 183740530 A-CCGGACACAAC-ACTGAGG--CCTGGT-GTGC-TGGGGC-GGGAA--CTGACCTCCCTGAC-ATCCGTATCATCA-GATGTACTG-CCCAGTCCAGAACAG---CTCT-CCAGCTCTTGGAGGCGCTCTTCCTGCTTTAAGTCTGGAGCCTCTGC i rn5.chr3 C 0 C 0 s hg19.chr9 13119090 141 - 141213431 A-CCGGACACAAC-ACTGAGG--CCTGGT-GTGC-TGGGGC-GGGAA--CTGACCTCCCTGAC-ATCCGTATCATCA-GATGTGCTA-CCCAGTCCAGAACAG---CTCT-CCAGTTCTTGCAGACGCTCCTCCTGCTTTAGGTCTGGGGCCTCTAA i hg19.chr9 C 0 C 0 s sorAra1.scaffold_258498 5946 141 + 196505 A-CCCGACACAAC-ACTGAGG--CCTGGT-GTGC-TGGGGC-GGGAA--CTGACCTCCCTGAC-ATCCGTGTCGTCA-GAGGTGCTG-CCCAGGCCGGAACAG---CTCT-CCAGCTCCTGCAGACGCTCCTCCTGCTTCAGGTCTGGGGCTTCTAG i sorAra1.scaffold_258498 C 0 C 0 a score=93544.0 s mm10.chr2 34706836 1 + 182113224 A s rn5.chr3 19098646 1 + 183740530 A i rn5.chr3 C 0 C 0 s hg19.chr9 13119231 1 - 141213431 A i hg19.chr9 C 0 C 0 s sorAra1.scaffold_258498 6087 1 + 196505 G i sorAra1.scaffold_258498 C 0 C 0 a score=265691.0 s mm10.chr2 34706837 6 + 182113224 CAGAAA- s rn5.chr3 19098647 6 + 183740530 CAGAGA- i rn5.chr3 C 0 C 0 s hg19.chr9 13119232 6 - 141213431 TAGAAG- i hg19.chr9 C 0 C 0 s sorAra1.scaffold_258498 6088 6 + 196505 GAAAGA- i sorAra1.scaffold_258498 C 0 C 0 a score=100475.0 s mm10.chr2 34706843 1 + 182113224 A s rn5.chr3 19098653 1 + 183740530 A i rn5.chr3 C 0 I 41 s hg19.chr9 13119238 1 - 141213431 A i hg19.chr9 C 0 I 45 s sorAra1.scaffold_258498 6094 1 + 196505 G i sorAra1.scaffold_258498 C 0 I 41 a score=123198.0 s mm10.chr2 34706844 2 + 182113224 CA s rn5.chr3 19098695 2 + 183740530 CA i rn5.chr3 I 41 C 0 s hg19.chr9 13119284 2 - 141213431 CA i hg19.chr9 I 45 C 0 s sorAra1.scaffold_258498 6136 2 + 196505 CC i sorAra1.scaffold_258498 I 41 C 0 a score=83667.0 s mm10.chr2 34706846 1 + 182113224 G s rn5.chr3 19098697 1 + 183740530 G i rn5.chr3 C 0 C 0 s hg19.chr9 13119286 1 - 141213431 G i hg19.chr9 C 0 C 0 s sorAra1.scaffold_258498 6138 1 + 196505 A i sorAra1.scaffold_258498 C 0 C 0 a score=30972.0 s mm10.chr2 34706847 1 + 182113224 C s rn5.chr3 19098698 1 + 183740530 C i rn5.chr3 C 0 C 0 s hg19.chr9 13119287 1 - 141213431 C i hg19.chr9 C 0 C 0 s sorAra1.scaffold_258498 6139 1 + 196505 C i sorAra1.scaffold_258498 C 0 C 0 a score=74745.0 s mm10.chr2 34706848 1 + 182113224 T s rn5.chr3 19098699 1 + 183740530 T i rn5.chr3 C 0 C 0 s hg19.chr9 13119288 1 - 141213431 T i hg19.chr9 C 0 C 0 s sorAra1.scaffold_258498 6140 1 + 196505 T i sorAra1.scaffold_258498 C 0 C 0 a score=223036.0 s mm10.chr2 34706849 11 + 182113224 TT------TG-TG--ACT-TA s rn5.chr3 19098700 11 + 183740530 TT------TG-TG--ACT-TA i rn5.chr3 C 0 C 0 s hg19.chr9 13119289 11 - 141213431 TT------TG-TG--ACC-CA i hg19.chr9 C 0 C 0 s sorAra1.scaffold_258498 6141 11 + 196505 TC------CG-TG--ACC-CA i sorAra1.scaffold_258498 C 0 C 0 a score=3047381.0 s mm10.chr2 34706860 139 + 182113224 GACATACAAG---C-------G-ATT-GGGG----AATAAA-GAGAT---TT----------A-------TAAG------CCTAAGCTACTT-AGC-AAAG-CTAGTTAG---ATCA---TAGTTTAAAGAAGAT-A---AGGTTATGA--TTTC-CTCCTGATA-----TACACACT---AGTTTGT----------TATGTACAG-ATGTCAAC---T s rn5.chr3 19098711 134 + 183740530 G----AGAAG---C-------C-ACT-GGGG----AATACC-TAGCT---TT----------A-------TAAG------TCTAAGTTACTC-ACC-AAAA-CTTGTTAG---ATCA---TAGATT-AAGAAGGC-A---AGGTTATAA--TTTC-CCCCTGATA-----TACACACT---AATTTGC----------TATGCACAG-ACGACAAC---T i rn5.chr3 C 0 C 0 s hg19.chr9 13119300 149 - 141213431 G----ATAAA---CAAAG--CT-ACC-AGGG----CATGAA-TAAAA---TCAGTG-CAAATACATGTG-TAAG------TCTGGACTAGTT-----AATG-CTAGTTAG---ATTA---AGTGTT----AAGTC-A---AAGTTGTGAT-TTTC-ATCCCAATA-----TAAGC--C---AGTTCAC----------TGTGCACAG-ATGAAAAC-GTG i hg19.chr9 C 0 C 0 s sorAra1.scaffold_258498 6152 151 + 196505 G----CTGAA---GAAAA--CTGAAC-AGGG----CTT--A-CGGAAGGGTCAGTG-TAAATAGATTTC-TAGG------TCTCGGCCAGTT-AGT-AAGG-CTGGTT-G---AAGA---AACGCCAAGGAAGTC-ATATCAACTCTGAT-TTTC--CCCCAGCA-----TAGGC--C---AGT----------------TGTACAG-ATAAAAAC-T-- i sorAra1.scaffold_258498 C 0 I 2 a score=-43731.0 s mm10.chr2 34706999 2 + 182113224 AT- s rn5.chr3 19098845 2 + 183740530 GT- i rn5.chr3 C 0 C 0 s hg19.chr9 13119449 1 - 141213431 G-- i hg19.chr9 C 0 C 0 s sorAra1.scaffold_258498 6305 2 + 196505 GG- i sorAra1.scaffold_258498 I 2 C 0 a score=126153.0 s mm10.chr2 34707001 4 + 182113224 TTCT- s rn5.chr3 19098847 4 + 183740530 TTCT- i rn5.chr3 C 0 C 0 s hg19.chr9 13119450 4 - 141213431 TTCT- i hg19.chr9 C 0 C 0 s sorAra1.scaffold_258498 6307 4 + 196505 TTTT- i sorAra1.scaffold_258498 C 0 C 0 a score=311713.0 s mm10.chr2 34707005 8 + 182113224 AGAATACT s rn5.chr3 19098851 8 + 183740530 AGACTACT i rn5.chr3 C 0 C 0 s hg19.chr9 13119454 8 - 141213431 AGATCACT i hg19.chr9 C 0 I 4 s sorAra1.scaffold_258498 6311 8 + 196505 AGATCACT i sorAra1.scaffold_258498 C 0 C 0 a score=-2161.0 s mm10.chr2 34707013 2 + 182113224 TT s rn5.chr3 19098859 2 + 183740530 CT i rn5.chr3 C 0 I 199 s hg19.chr9 13119466 1 - 141213431 -T i hg19.chr9 I 4 I 1 a score=-432190.0 s mm10.chr2 34707015 20 + 182113224 AAAGAAAAAAAAAAGCG------------AT----------T--------------- s rn5.chr3 19099060 26 + 183740530 aaacaaaacaaaacaaa------------acTGTA----CAT--------------- i rn5.chr3 I 199 C 0 s hg19.chr9 13119468 11 - 141213431 ---------------------------ACAGAGTA----TGC--------------- i hg19.chr9 I 1 C 0 s sorAra1.scaffold_258498 6319 17 + 196505 -------------------ATT--CTCAATGAGTG----TGC--------------- i sorAra1.scaffold_258498 C 0 C 0 a score=221858.0 s mm10.chr2 34707035 6 + 182113224 TCTTGG s rn5.chr3 19099086 6 + 183740530 TCTTGG i rn5.chr3 C 0 C 0 s hg19.chr9 13119479 6 - 141213431 TATTGA i hg19.chr9 C 0 C 0 s sorAra1.scaffold_258498 6336 5 + 196505 TAC-GG i sorAra1.scaffold_258498 C 0 C 0 a score=458493.0 s mm10.chr2 34707041 12 + 182113224 TTAACACGTAAA- s rn5.chr3 19099092 12 + 183740530 TTAACACATAAA- i rn5.chr3 C 0 C 0 s hg19.chr9 13119485 12 - 141213431 TTAACATGTGAA- i hg19.chr9 C 0 C 0 s sorAra1.scaffold_258498 6341 12 + 196505 CTAACATGAAAA- i sorAra1.scaffold_258498 C 0 C 0 a score=67988.0 s mm10.chr2 34707053 8 + 182113224 CTA---ATCAA s rn5.chr3 19099104 5 + 183740530 CTG------AA i rn5.chr3 C 0 C 0 s hg19.chr9 13119497 5 - 141213431 CTG------GA i hg19.chr9 C 0 C 0 s sorAra1.scaffold_258498 6353 5 + 196505 CTG------AA i sorAra1.scaffold_258498 C 0 C 0 a score=123485.0 s mm10.chr2 34707061 3 + 182113224 TAG s rn5.chr3 19099109 3 + 183740530 CAG i rn5.chr3 C 0 C 0 s hg19.chr9 13119502 3 - 141213431 CAA i hg19.chr9 C 0 C 0 s sorAra1.scaffold_258498 6358 3 + 196505 CAA i sorAra1.scaffold_258498 C 0 C 0 a score=33526.0 s mm10.chr2 34707064 4 + 182113224 GA--GC-- s rn5.chr3 19099112 4 + 183740530 GA--GC-- i rn5.chr3 C 0 C 0 s hg19.chr9 13119505 6 - 141213431 GAGAGT-- i hg19.chr9 C 0 C 0 s sorAra1.scaffold_258498 6361 6 + 196505 GAACGC-- i sorAra1.scaffold_258498 C 0 C 0 a score=167903.0 s mm10.chr2 34707068 8 + 182113224 A-CAGAAT--A s rn5.chr3 19099116 8 + 183740530 A-CAGAAT--A i rn5.chr3 C 0 C 0 s hg19.chr9 13119511 8 - 141213431 A-TGGAAT--A i hg19.chr9 C 0 C 0 s sorAra1.scaffold_258498 6367 7 + 196505 A-GAGAAG--- i sorAra1.scaffold_258498 C 0 C 0 a score=2760.0 s mm10.chr2 34707076 1 + 182113224 A s rn5.chr3 19099124 1 + 183740530 G i rn5.chr3 C 0 C 0 s hg19.chr9 13119519 1 - 141213431 G i hg19.chr9 C 0 C 0 a score=-203.0 s mm10.chr2 34707077 4 + 182113224 TATA--- s rn5.chr3 19099125 3 + 183740530 TGT---- i rn5.chr3 C 0 C 0 s hg19.chr9 13119520 3 - 141213431 CCT---- i hg19.chr9 C 0 C 0 a score=73448.0 s mm10.chr2 34707081 10 + 182113224 CAACACTGTA--- s rn5.chr3 19099128 9 + 183740530 -AACACTGTA--- i rn5.chr3 C 0 C 0 s hg19.chr9 13119523 9 - 141213431 -GGTATTAAA--- i hg19.chr9 C 0 C 0 s sorAra1.scaffold_258498 6374 1 + 196505 ---------A--- i sorAra1.scaffold_258498 C 0 C 0 a score=-28287.0 s mm10.chr2 34707091 5 + 182113224 TCAA---C s rn5.chr3 19099137 7 + 183740530 TCCACT-C i rn5.chr3 C 0 C 0 s sorAra1.scaffold_258498 6375 5 + 196505 TCAAC--- i sorAra1.scaffold_258498 C 0 C 0 a score=4831.0 s mm10.chr2 34707096 1 + 182113224 T s rn5.chr3 19099144 1 + 183740530 T i rn5.chr3 C 0 C 0 s hg19.chr9 13119532 1 - 141213431 T i hg19.chr9 C 0 I 709 s sorAra1.scaffold_258498 6380 1 + 196505 T i sorAra1.scaffold_258498 C 0 I 1 a score=555.0 s mm10.chr2 34707097 1 + 182113224 C s rn5.chr3 19099145 1 + 183740530 C i rn5.chr3 C 0 C 0 a score=18165.0 s mm10.chr2 34707098 3 + 182113224 TCT s rn5.chr3 19099146 3 + 183740530 TCT i rn5.chr3 C 0 C 0 s sorAra1.scaffold_258498 6382 2 + 196505 -TT i sorAra1.scaffold_258498 I 1 C 0 a score=32760.0 s mm10.chr2 34707101 3 + 182113224 AAA s rn5.chr3 19099149 3 + 183740530 AAA i rn5.chr3 C 0 C 0 s sorAra1.scaffold_258498 6384 3 + 196505 AAA i sorAra1.scaffold_258498 C 0 C 0 a score=-12377.0 s mm10.chr2 34707104 8 + 182113224 TCTCAATG s rn5.chr3 19099152 8 + 183740530 GTTCAATG i rn5.chr3 C 0 C 0 s sorAra1.scaffold_258498 6387 6 + 196505 --TTTAAA i sorAra1.scaffold_258498 C 0 I 672 a score=13142.0 s mm10.chr2 34707112 17 + 182113224 ttctcaaaagcacttaa--- s rn5.chr3 19099160 17 + 183740530 TTTTCAAAAGCACTTAC--- i rn5.chr3 C 0 C 0 a score=2730.0 s mm10.chr2 34707129 2 + 182113224 aa s rn5.chr3 19099177 2 + 183740530 AA i rn5.chr3 C 0 C 0 a score=1746.0 s mm10.chr2 34707131 3 + 182113224 tgg s rn5.chr3 19099179 3 + 183740530 Tgg i rn5.chr3 C 0 C 0 a score=1998.0 s mm10.chr2 34707134 22 + 182113224 gcat------gaca--gcagggcaatctca s rn5.chr3 19099182 24 + 183740530 gcat------gatattgcagggcactctca i rn5.chr3 C 0 C 0 a score=452.0 s mm10.chr2 34707156 4 + 182113224 acac s rn5.chr3 19099206 4 + 183740530 gcac i rn5.chr3 C 0 C 0 a score=8445.0 s mm10.chr2 34707160 152 + 182113224 tcaataagcagaggcaggtggatctctgtgagtttgagtccagcctaaaatacactggcagttccatgaatagcctgagctacatgacgagatcctgtctcaaaCTAGCTCCAAAAAGGAAGACAGG-AAAATCATTTCTTTACTTAATACTT s rn5.chr3 19099210 147 + 183740530 tcaagaggcagaggcaggtgga--tctgtaagtctgaggccagcctgaggttcactggcagttcca-gcatagcctgagctacatgatgagaccctggctcaaaccaa---aagaaaGAAAGAAAGGAAAAATGATTTCTTTATCTAATATTT i rn5.chr3 C 0 I 1 a score=0.0 s mm10.chr2 34707312 6 + 182113224 TACCTA