Mercurial > repos > iuc > pygenometracks
view test-data/test3.ini @ 6:5cec5fb749f0 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit d5b42c5571c64be9fcfe515e79210cbf4c75beaf"
author | iuc |
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date | Tue, 11 Feb 2020 10:20:24 -0500 |
parents | eca03db4f612 |
children | 326a3db8d9d1 |
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[x-axis] where = top [hic_section_0_0] file = test-data/Li_et_al_2015.h5 file_type = hic_matrix title = Kc DpnII (Li et al. 2015) log1p depth = 200000 colormap = RdYlBu_r transform = log1p scale_factor = 1.0 rasterize = true [tads_0_0] file = test-data/domains.bed file_type = domains border_color = black color = none overlay_previous = share-y [chrom states_1] file = test-data/tad_classification.bed title = TAD state color = bed_rgb border_color = #000000 display = collapsed height = 0.5 line_width = 0.5 file_type = bed [hic_section_2_0] file = test-data/Li_et_al_2015.h5 file_type = hic_matrix title = Kc DpnII (Li et al. 2015) inverted no transform depth = 200000 colormap = Reds min_value = 5.0 max_value = 70.0 orientation = inverted scale_factor = 1.0 rasterize = true [spacer] height = 1.0 [bedgraph_4] file = test-data/test_with_neg_values.bg.gz title = bedgraph with negative values color = black alpha = 1.0 negative_color = red height = 4.0 show_data_range = false nans_to_zeros = false use_middle = false file_type = bedgraph type = fill overlay_previous = no [bedgraph_5] file = test-data/bedgraph_chrx_2e6_5e6.bg title = bedgraph color = blue alpha = 1.0 height = 4.0 show_data_range = false nans_to_zeros = false use_middle = false file_type = bedgraph type = fill overlay_previous = no [bigwig_6] file = test-data/bigwig_chrx_2e6_5e6.bw title = rep 1 test fill color = blue alpha = 1.0 height = 4.0 summary_method = mean nans_to_zeros = false type = fill show_data_range = false file_type = bigwig overlay_previous = no [bigwig_7] file = test-data/bigwig_chrx_2e6_5e6.bw title = (red points/width=5/max value/100 bins) overlayed with (dark red line/min value/30000 bins) overlayed with (black line/min value) color = red alpha = 1.0 height = 10.0 summary_method = max nans_to_zeros = false number_of_bins = 100 type = points:5.0 show_data_range = false file_type = bigwig overlay_previous = no [bigwig_8] file = test-data/bigwig_chrx_2e6_5e6.bw color = #c00000 alpha = 1.0 height = 10.0 summary_method = min nans_to_zeros = false type = line:0.5 show_data_range = false file_type = bigwig overlay_previous = share-y [bigwig_9] file = test-data/bigwig_chrx_2e6_5e6.bw color = black alpha = 1.0 height = 10.0 summary_method = min nans_to_zeros = false number_of_bins = 30000 type = line:0.5 show_data_range = false file_type = bigwig overlay_previous = share-y [spacer] height = 1.0 [genes_10_0] file = test-data/dm3_genes.bed.gz title = genes in ucsc color = #000000 border_color = #000000 style = UCSC arrow_interval = 2 display = stacked height = 5.0 labels = true file_type = bed fontsize = 10 global_max_row = false max_labels = 60 line_width = 0.5 arrowhead_included = false overlay_previous = no [genes_11_0] file = test-data/dm3_genes.bed6.gz title = bed6 global max row color from score color = RdYlBu_r border_color = #000000 style = flybase height_utr = 1.0 color_utr = grey display = stacked height = 20.0 labels = true file_type = bed fontsize = 10 global_max_row = true max_labels = 60 line_width = 0.5 arrowhead_included = false overlay_previous = no [genes_12_0] file = test-data/domains.bed title = domains.bed using the 9th field for colors interleaved color = bed_rgb border_color = red style = flybase height_utr = 1.0 color_utr = grey display = interleaved height = 2.0 labels = false file_type = bed fontsize = 10 global_max_row = false max_labels = 60 line_width = 0.5 arrowhead_included = false overlay_previous = no