Mercurial > repos > iuc > qiime_beta_diversity

comparison beta_diversity.xml @ 7:b38301bc5335 draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c845cb240f57663cf1e2240c5c506ea0b294872c"
author iuc
date Thu, 05 Dec 2019 07:49:40 -0500
parents 206c7eb264db
children
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6:035a422159fe 7:b38301bc5335
1 <tool id="qiime_beta_diversity" name="Calculate beta diversity" version="@WRAPPER_VERSION@.0"> 1 <tool id="qiime_beta_diversity" name="Calculate beta diversity" version="@WRAPPER_VERSION@.0" profile="@PROFILE@">
2 <description>(pairwise sample dissimilarity) on one or many otu tables (beta_diversity)</description> 2 <description>(pairwise sample dissimilarity) on one or many otu tables (beta_diversity)</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements"/> 6 <expand macro="requirements"/>
7 <stdio> 7 <stdio>
8 <regex match="VisibleDeprecationWarning" source="both" level="warning" description="VisibleDeprecationWarning on numpy for `rank`"/> 8 <regex match="VisibleDeprecationWarning" source="both" level="warning" description="VisibleDeprecationWarning on numpy for `rank`"/>
9 </stdio> 9 </stdio>
10 <version_command>beta_diversity.py --version</version_command> 10 <version_command>beta_diversity.py --version</version_command>
11 <command detect_errors="aggressive"><![CDATA[ 11 <command detect_errors="aggressive"><![CDATA[
12 @MPLBACKEND@
12 #set $chosen_metrics = str( $metrics ).split( "," ) 13 #set $chosen_metrics = str( $metrics ).split( "," )
13 beta_diversity.py 14 beta_diversity.py
14 --input_path '$input_path' 15 --input_path '$input_path'
15 #if $rows 16 #if $rows
16 --rows '$rows' 17 --rows '$rows'