Mercurial > repos > iuc > qiime_core_diversity

comparison core_diversity_analyses.xml @ 3:61e86fd975a4 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit a831282140ce160035a4ce984f48cc20198ed0a1
author iuc
date Thu, 22 Jun 2017 07:02:52 -0400
parents 2a7e18c4a657
children 486570c88d1b
comparison
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2:1d25ea99d4b6 3:61e86fd975a4
96 <has_text text="rarefied BIOM table (sampling depth: 22)"/> 96 <has_text text="rarefied BIOM table (sampling depth: 22)"/>
97 <has_text text="Beta diversity results"/> 97 <has_text text="Beta diversity results"/>
98 </assert_contents> 98 </assert_contents>
99 </output> 99 </output>
100 </test> 100 </test>
101 <test><!-- test alpha diversity -->
102 <param name="input_biom_fp" value="core_diversity_analyses/otu_table.biom"/>
103 <param name="mapping_fp" value="core_diversity_analyses/map.txt"/>
104 <param name="parameter_fp" value="core_diversity_analyses/alpha_diversity_params.txt"/>
105 <param name="sampling_depth" value="22"/>
106 <param name="parallel" value="--parallel"/>
107 <param name="nonphylogenetic_diversity" value="--nonphylogenetic_diversity"/>
108 <param name="suppress_taxa_summary" value="--suppress_taxa_summary"/>
109 <param name="suppress_beta_diversity" value="--suppress_beta_diversity"/>
110 <param name="suppress_alpha_diversity" value=""/>
111 <param name="suppress_group_significance" value="--suppress_group_significance"/>
112 <output name="html_report">
113 <assert_contents>
114 <has_text text="Filtered BIOM table (minimum sequence count: 22)"/>
115 <has_text text="rarefied BIOM table (sampling depth: 22)"/>
116 <has_text text="Alpha rarefaction plots"/>
117 </assert_contents>
118 </output>
119 </test>
101 <test><!-- test suppressing all --> 120 <test><!-- test suppressing all -->
102 <param name="input_biom_fp" value="core_diversity_analyses/otu_table.biom"/> 121 <param name="input_biom_fp" value="core_diversity_analyses/otu_table.biom"/>
103 <param name="mapping_fp" value="core_diversity_analyses/map.txt"/> 122 <param name="mapping_fp" value="core_diversity_analyses/map.txt"/>
104 <param name="sampling_depth" value="22"/> 123 <param name="sampling_depth" value="22"/>
105 <param name="parallel" value="--parallel"/> 124 <param name="parallel" value="--parallel"/>