Mercurial > repos > iuc > qiime_core_diversity

changeset 7:57deb17cadbf draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c845cb240f57663cf1e2240c5c506ea0b294872c"
author iuc
date Thu, 05 Dec 2019 07:36:19 -0500
parents 5fc2acd6de43
children
files core_diversity_analyses.xml macros.xml
diffstat 2 files changed, 4 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/core_diversity_analyses.xml	Tue Oct 30 19:30:31 2018 -0400
+++ b/core_diversity_analyses.xml	Thu Dec 05 07:36:19 2019 -0500
@@ -1,4 +1,4 @@
-<tool id="qiime_core_diversity" name="Run a core set of QIIME diversity analyses" version="@WRAPPER_VERSION@.0">
+<tool id="qiime_core_diversity" name="Run a core set of QIIME diversity analyses" version="@WRAPPER_VERSION@.0" profile="@PROFILE@">
     <description>(core_diversity_analyses)</description>
     <macros>
         <import>macros.xml</import>
@@ -6,9 +6,7 @@
     <expand macro="requirements"/>
     <version_command>core_diversity_analyses.py --version</version_command>
     <command detect_errors="aggressive"><![CDATA[
-## set matplotlib backend
-echo "backend:agg" > matplotlibrc &&
-
+@MPLBACKEND@
 core_diversity_analyses.py
     --input_biom_fp '$input_biom_fp'
     -o core_diversity_analyses
--- a/macros.xml	Tue Oct 30 19:30:31 2018 -0400
+++ b/macros.xml	Thu Dec 05 07:36:19 2019 -0500
@@ -1,6 +1,8 @@
 <?xml version="1.0" ?>
 <macros>
+    <token name="@PROFILE@">18.01</token>
     <token name="@WRAPPER_VERSION@">1.9.1</token>
+    <token name="@MPLBACKEND@"><![CDATA[export MPLBACKEND=Agg && echo "backend:agg" > matplotlibrc &&]]></token>
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="@WRAPPER_VERSION@">qiime</requirement>