Mercurial > repos > iuc > qiime_make_phylogeny

comparison make_phylogeny.xml @ 5:9e5b2251a6a5 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 3b54163c4f7daff76fcc589c4a9057bb03904380
author iuc
date Sat, 05 Aug 2017 07:18:32 -0400
parents e82369a926e3
children f66e778d7e6d
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4:1042f194c3cd 5:9e5b2251a6a5
1 <tool id="qiime_make_phylogeny" name="Make phylogeny" version="@WRAPPER_VERSION@.0"> 1 <tool id="qiime_make_phylogeny" name="Make phylogeny" version="@WRAPPER_VERSION@.0">
2 <description></description> 2 <description> (make_phylogeny)</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements"> 6 <expand macro="requirements">
7 <requirement type="package" version="8.2.9">raxml</requirement> 7 <requirement type="package" version="8.2.9">raxml</requirement>
9 <requirement type="package" version="3.8.1551">muscle</requirement> 9 <requirement type="package" version="3.8.1551">muscle</requirement>
10 <requirement type="package" version="1.0.9">clearcut</requirement> 10 <requirement type="package" version="1.0.9">clearcut</requirement>
11 </expand> 11 </expand>
12 <version_command>make_phylogeny.py --version</version_command> 12 <version_command>make_phylogeny.py --version</version_command>
13 <command detect_errors="aggressive"><![CDATA[ 13 <command detect_errors="aggressive"><![CDATA[
14 make_phylogeny.py 14 make_phylogeny.py
15 --input_fp '$input_fp' 15 --input_fp '$input_fp'
16 --result_fp '$result_fp' 16 --result_fp '$result_fp'
17 --tree_method '$tree_method' 17 --tree_method '$tree_method'
18 --log_fp '$log_fp' 18 --log_fp '$log_fp'
19 --root_method '$root_method' 19 --root_method '$root_method'
20 ]]></command> 20 ]]></command>
21 <inputs> 21 <inputs>
22 <param argument="--input_fp" type="data" format="fasta" label="Input fasta alignment"/> 22 <param argument="--input_fp" type="data" format="fasta" label="Input fasta alignment"/>
23 <param argument="--tree_method" type="select" label="Method for tree building"> 23 <param argument="--tree_method" type="select" label="Method for tree building">
24 <option value="clustalw">ClustalW</option> 24 <option value="clustalw">ClustalW</option>