Mercurial > repos > iuc > qiime_pick_closed_reference_otus

comparison pick_closed_reference_otus.xml @ 5:5307c6be95df draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c845cb240f57663cf1e2240c5c506ea0b294872c"
author iuc
date Thu, 05 Dec 2019 07:41:48 -0500
parents 935abbf93f99
children
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4:cad5d510e98e 5:5307c6be95df
1 <tool id="qiime_pick_closed_reference_otus" name="Closed-reference OTU picking" version="@WRAPPER_VERSION@.0"> 1 <tool id="qiime_pick_closed_reference_otus" name="Closed-reference OTU picking" version="@WRAPPER_VERSION@.0" profile="@PROFILE@">
2 <description> Shotgun UniFrac workflow (pick_closed_reference_otus)</description> 2 <description> Shotgun UniFrac workflow (pick_closed_reference_otus)</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements"/> 6 <expand macro="requirements"/>
7 <version_command>pick_closed_reference_otus.py --version</version_command> 7 <version_command>pick_closed_reference_otus.py --version</version_command>
8 <command detect_errors="aggressive"><![CDATA[ 8 <command detect_errors="aggressive"><![CDATA[
9 @MPLBACKEND@
9 pick_closed_reference_otus.py 10 pick_closed_reference_otus.py
10 --input_fp '$input_fp' 11 --input_fp '$input_fp'
11 --output_dir otus 12 --output_dir otus
12 #if str( $ref_seq.selector ) == 'history' 13 #if str( $ref_seq.selector ) == 'history'
13 #set $ref = $ref_seq.reference_fp 14 #set $ref = $ref_seq.reference_fp