Mercurial > repos > iuc > qiime_pick_closed_reference_otus

changeset 5:5307c6be95df draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c845cb240f57663cf1e2240c5c506ea0b294872c"
author iuc
date Thu, 05 Dec 2019 07:41:48 -0500
parents cad5d510e98e
children
files macros.xml pick_closed_reference_otus.xml
diffstat 2 files changed, 4 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/macros.xml	Tue Oct 30 19:33:55 2018 -0400
+++ b/macros.xml	Thu Dec 05 07:41:48 2019 -0500
@@ -1,6 +1,8 @@
 <?xml version="1.0" ?>
 <macros>
+    <token name="@PROFILE@">18.01</token>
     <token name="@WRAPPER_VERSION@">1.9.1</token>
+    <token name="@MPLBACKEND@"><![CDATA[export MPLBACKEND=Agg && echo "backend:agg" > matplotlibrc &&]]></token>
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="@WRAPPER_VERSION@">qiime</requirement>
--- a/pick_closed_reference_otus.xml	Tue Oct 30 19:33:55 2018 -0400
+++ b/pick_closed_reference_otus.xml	Thu Dec 05 07:41:48 2019 -0500
@@ -1,4 +1,4 @@
-<tool id="qiime_pick_closed_reference_otus" name="Closed-reference OTU picking" version="@WRAPPER_VERSION@.0">
+<tool id="qiime_pick_closed_reference_otus" name="Closed-reference OTU picking" version="@WRAPPER_VERSION@.0" profile="@PROFILE@">
     <description> Shotgun UniFrac workflow (pick_closed_reference_otus)</description>
     <macros>
         <import>macros.xml</import>
@@ -6,6 +6,7 @@
     <expand macro="requirements"/>
     <version_command>pick_closed_reference_otus.py --version</version_command>
     <command detect_errors="aggressive"><![CDATA[
+@MPLBACKEND@
 pick_closed_reference_otus.py
     --input_fp '$input_fp'
     --output_dir otus