Mercurial > repos > iuc > qiime_pick_rep_set

comparison macros.xml @ 3:c95abbb6ebb3 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit a831282140ce160035a4ce984f48cc20198ed0a1
author iuc
date Thu, 22 Jun 2017 06:59:09 -0400
parents 6ebade612aa0
children 10214bba6195
comparison
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2:05feaea4b7fb 3:c95abbb6ebb3
27 <when value="history"> 27 <when value="history">
28 <param argument="--refseqs_fp" type="data" format="fasta" label="Reference sequences to search against"/> 28 <param argument="--refseqs_fp" type="data" format="fasta" label="Reference sequences to search against"/>
29 </when> 29 </when>
30 </conditional> 30 </conditional>
31 </xml> 31 </xml>
32 <xml name="assign_taxonomy_reference_source">
33 <conditional name="references">
34 <param name="source_selector" type="select" label="Select a reference sequence file from">
35 <option value="cached">The local cache</option>
36 <option value="history">The active history</option>
37 </param>
38 <when value="cached">
39 <param argument="--reference_seqs_fp" label="Reference sequences either used to generate a blast database (Blast) or used as training sequences for the selected classifier (RDP, Mothur)" type="select">
40 <options from_data_table="qiime_rep_set"/>
41 </param>
42 </when>
43 <when value="history">
44 <param argument="--reference_seqs_fp" type="data" format="fasta" label="Reference sequences to search against"/>
45 </when>
46 </conditional>
47 </xml>
32 <xml name="pick_otus_similarity"> 48 <xml name="pick_otus_similarity">
33 <param argument="--similarity" type="float" value="0.97" label="Sequence similarity threshold"/> 49 <param argument="--similarity" type="float" value="0.97" label="Sequence similarity threshold"/>
34 </xml> 50 </xml>
35 <xml name="pick_otus_denovo_otu_id_prefix"> 51 <xml name="pick_otus_denovo_otu_id_prefix">
36 <param argument="--denovo_otu_id_prefix" type="text" value="denovo" label="OTU identifier prefix for the de novo OTU pickers"/> 52 <param argument="--denovo_otu_id_prefix" type="text" value="denovo" label="OTU identifier prefix for the de novo OTU pickers"/>