Mercurial > repos > iuc > qiime_plot_taxa_summary

comparison plot_taxa_summary.xml @ 7:ab12aca3ede9 draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c845cb240f57663cf1e2240c5c506ea0b294872c"
author iuc
date Thu, 05 Dec 2019 07:55:48 -0500
parents d0910542c8f6
children
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6:c6d84b3ad9db 7:ab12aca3ede9
1 <tool id="qiime_plot_taxa_summary" name="Make taxonomy summary charts" version="@WRAPPER_VERSION@.0"> 1 <tool id="qiime_plot_taxa_summary" name="Make taxonomy summary charts" version="@WRAPPER_VERSION@.0" profile="@PROFILE@">
2 <description> based on taxonomy assignment (plot_taxa_summary)</description> 2 <description> based on taxonomy assignment (plot_taxa_summary)</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements"/> 6 <expand macro="requirements"/>
7 <version_command>MPLBACKEND="Agg" plot_taxa_summary.py --version</version_command> 7 <version_command>MPLBACKEND="Agg" plot_taxa_summary.py --version</version_command>
8 <command detect_errors="aggressive"><![CDATA[ 8 <command detect_errors="aggressive"><![CDATA[
9 #set $chosen_chart_type = str( $chart_type ).split( "," ) 9 #set $chosen_chart_type = str( $chart_type ).split( "," )
10 10 @MPLBACKEND@
11 ## set matplotlib backend
12 export MPLBACKEND="Agg" &&
13 echo "backend:agg" > matplotlibrc &&
14
15 plot_taxa_summary.py 11 plot_taxa_summary.py
16 --counts_fname '$counts_fname' 12 --counts_fname '$counts_fname'
17 --dir_path taxa_plots 13 --dir_path taxa_plots
18 --labels '$labels' 14 --labels '$labels'
19 --num_categories '$num_categories' 15 --num_categories '$num_categories'