# HG changeset patch # User iuc # Date 1575550548 18000 # Node ID ab12aca3ede9b8f10edaa71544734ba425421dfd # Parent c6d84b3ad9db1c4f62eb85d7f104a9b3ac4bc88a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c845cb240f57663cf1e2240c5c506ea0b294872c" diff -r c6d84b3ad9db -r ab12aca3ede9 macros.xml --- a/macros.xml Tue Oct 30 19:40:30 2018 -0400 +++ b/macros.xml Thu Dec 05 07:55:48 2019 -0500 @@ -1,6 +1,8 @@ <?xml version="1.0" ?> <macros> + <token name="@PROFILE@">18.01</token> <token name="@WRAPPER_VERSION@">1.9.1</token> + <token name="@MPLBACKEND@"><![CDATA[export MPLBACKEND=Agg && echo "backend:agg" > matplotlibrc &&]]></token> <xml name="requirements"> <requirements> <requirement type="package" version="@WRAPPER_VERSION@">qiime</requirement> diff -r c6d84b3ad9db -r ab12aca3ede9 plot_taxa_summary.xml --- a/plot_taxa_summary.xml Tue Oct 30 19:40:30 2018 -0400 +++ b/plot_taxa_summary.xml Thu Dec 05 07:55:48 2019 -0500 @@ -1,4 +1,4 @@ -<tool id="qiime_plot_taxa_summary" name="Make taxonomy summary charts" version="@WRAPPER_VERSION@.0"> +<tool id="qiime_plot_taxa_summary" name="Make taxonomy summary charts" version="@WRAPPER_VERSION@.0" profile="@PROFILE@"> <description> based on taxonomy assignment (plot_taxa_summary)</description> <macros> <import>macros.xml</import> @@ -7,11 +7,7 @@ <version_command>MPLBACKEND="Agg" plot_taxa_summary.py --version</version_command> <command detect_errors="aggressive"><![CDATA[ #set $chosen_chart_type = str( $chart_type ).split( "," ) - -## set matplotlib backend -export MPLBACKEND="Agg" && -echo "backend:agg" > matplotlibrc && - +@MPLBACKEND@ plot_taxa_summary.py --counts_fname '$counts_fname' --dir_path taxa_plots