Mercurial > repos > iuc > qiime_upgma_cluster

annotate test-data/map.tsv.html @ 4:d44bd2602944 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit d41cdeeec9fd0eb5612df0d5af63a979d1c9ec87
author iuc
date Mon, 10 Jul 2017 16:44:06 -0400
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e7324235f49e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c9bf747b23b4a9d6adc20c7740b9247c22654862
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1 <html>
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2 <head>
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4 <script type="text/javascript" src="./overlib.js"></script>
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5 </head>
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6 <body bgcolor="white"> <h1>No errors or warnings detected.<br></h1><h1>Mapping file error and warning details.</h1>
e7324235f49e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c9bf747b23b4a9d6adc20c7740b9247c22654862
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7 Notes for interpreting this report:
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8 <ul>
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9 <li>Errors will be listed in red, warnings in yellow.
e7324235f49e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c9bf747b23b4a9d6adc20c7740b9247c22654862
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10 <li>Mouse over an error or warning in a cell for more details.
e7324235f49e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c9bf747b23b4a9d6adc20c7740b9247c22654862
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11 <li>Errors in the header row may mask other errors, so these should be corrected first.
e7324235f49e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c9bf747b23b4a9d6adc20c7740b9247c22654862
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12 <li>Modifications to your mapping file to fix certain issues may result in different errors. You should run <tt>validate_mapping_file.py</tt> until no errors (nor warnings, ideally) are found.
e7324235f49e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c9bf747b23b4a9d6adc20c7740b9247c22654862
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13 </ul>
e7324235f49e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c9bf747b23b4a9d6adc20c7740b9247c22654862
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14 <p>
e7324235f49e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c9bf747b23b4a9d6adc20c7740b9247c22654862
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15 Some general rules about formatting mapping files (see <a href="http://qiime.org/documentation/file_formats.html#metadata-mapping-files">here</a> for additional details):
e7324235f49e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c9bf747b23b4a9d6adc20c7740b9247c22654862
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16 <ul>
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17 <li>Header characters should only contain alphanumeric and <tt>_</tt> characters only.
e7324235f49e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c9bf747b23b4a9d6adc20c7740b9247c22654862
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18 <li>Valid characters for SampleID fields are alphanumeric and <tt>.</tt> only.<br>
e7324235f49e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c9bf747b23b4a9d6adc20c7740b9247c22654862
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19 <li>Other fields allow alphanumeric and <tt>+-%./ :,;_</tt> characters.
e7324235f49e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c9bf747b23b4a9d6adc20c7740b9247c22654862
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20 </ul>
e7324235f49e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c9bf747b23b4a9d6adc20c7740b9247c22654862
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21 General issues with your mapping file (i.e., those that do not pertain to a particular cell) will be listed here, if any:<table border="1" cellspacing="0" cellpadding="7"><tr></tr></table><br>
e7324235f49e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c9bf747b23b4a9d6adc20c7740b9247c22654862
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22 <table border="2" cellspacing="0" cellpadding="5">
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23
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24 <tr></tr>
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25 <tr>
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26 <th>SampleID</th><th>BarcodeSequence</th><th>LinkerPrimerSequence</th><th>SampleType</th><th>Year</th><th>Month</th><th>Day</th><th>Subject</th><th>ReportedAntibioticUsage</th><th>DaysSinceExperimentStart</th><th>Description</th>
e7324235f49e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c9bf747b23b4a9d6adc20c7740b9247c22654862
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27 </tr>
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28
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29 <tr>
e7324235f49e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c9bf747b23b4a9d6adc20c7740b9247c22654862
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30 <tr><th><tt>L1S8</tt></th><th><tt>AGCTGACTAGTC</tt></th><th><tt>GTGCCAGCMGCCGCGGTAA</tt></th><th><tt>gut</tt></th><th><tt>2008</tt></th><th><tt>10</tt></th><th><tt>28</tt></th><th><tt>1</tt></th><th><tt>Yes</tt></th><th><tt>0</tt></th><th><tt>1_Fece_10_28_2008
e7324235f49e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c9bf747b23b4a9d6adc20c7740b9247c22654862
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31 </tt></th></tr><tr><th><tt>L1S140</tt></th><th><tt>ATGGCAGCTCTA</tt></th><th><tt>GTGCCAGCMGCCGCGGTAA</tt></th><th><tt>gut</tt></th><th><tt>2008</tt></th><th><tt>10</tt></th><th><tt>28</tt></th><th><tt>2</tt></th><th><tt>Yes</tt></th><th><tt>0</tt></th><th><tt>2_Fece_10_28_2008
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32 </tt></th></tr><tr><th><tt>L1S57</tt></th><th><tt>ACACACTATGGC</tt></th><th><tt>GTGCCAGCMGCCGCGGTAA</tt></th><th><tt>gut</tt></th><th><tt>2009</tt></th><th><tt>1</tt></th><th><tt>20</tt></th><th><tt>1</tt></th><th><tt>No</tt></th><th><tt>84</tt></th><th><tt>1_Fece_1_20_2009
e7324235f49e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c9bf747b23b4a9d6adc20c7740b9247c22654862
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33 </tt></th></tr><tr><th><tt>L1S208</tt></th><th><tt>CTGAGATACGCG</tt></th><th><tt>GTGCCAGCMGCCGCGGTAA</tt></th><th><tt>gut</tt></th><th><tt>2009</tt></th><th><tt>1</tt></th><th><tt>20</tt></th><th><tt>2</tt></th><th><tt>No</tt></th><th><tt>84</tt></th><th><tt>2_Fece_1_20_2009
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34 </tt></th></tr><tr><th><tt>L1S76</tt></th><th><tt>ACTACGTGTGGT</tt></th><th><tt>GTGCCAGCMGCCGCGGTAA</tt></th><th><tt>gut</tt></th><th><tt>2009</tt></th><th><tt>2</tt></th><th><tt>17</tt></th><th><tt>1</tt></th><th><tt>No</tt></th><th><tt>112</tt></th><th><tt>1_Fece_2_17_2009
e7324235f49e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c9bf747b23b4a9d6adc20c7740b9247c22654862
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35 </tt></th></tr><tr><th><tt>L1S105</tt></th><th><tt>AGTGCGATGCGT</tt></th><th><tt>GTGCCAGCMGCCGCGGTAA</tt></th><th><tt>gut</tt></th><th><tt>2009</tt></th><th><tt>3</tt></th><th><tt>17</tt></th><th><tt>1</tt></th><th><tt>No</tt></th><th><tt>140</tt></th><th><tt>1_Fece_3_17_2009
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36 </tt></th></tr><tr><th><tt>L1S257</tt></th><th><tt>CCGACTGAGATG</tt></th><th><tt>GTGCCAGCMGCCGCGGTAA</tt></th><th><tt>gut</tt></th><th><tt>2009</tt></th><th><tt>3</tt></th><th><tt>17</tt></th><th><tt>2</tt></th><th><tt>No</tt></th><th><tt>140</tt></th><th><tt>2_Fece_3_17_2009
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37 </tt></th></tr><tr><th><tt>L1S281</tt></th><th><tt>CCTCTCGTGATC</tt></th><th><tt>GTGCCAGCMGCCGCGGTAA</tt></th><th><tt>gut</tt></th><th><tt>2009</tt></th><th><tt>4</tt></th><th><tt>14</tt></th><th><tt>2</tt></th><th><tt>No</tt></th><th><tt>168</tt></th><th><tt>2_Fece_4_14_2009
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38 </tt></th></tr><tr><th><tt>L2S240</tt></th><th><tt>CATATCGCAGTT</tt></th><th><tt>GTGCCAGCMGCCGCGGTAA</tt></th><th><tt>left palm</tt></th><th><tt>2008</tt></th><th><tt>10</tt></th><th><tt>28</tt></th><th><tt>2</tt></th><th><tt>Yes</tt></th><th><tt>0</tt></th><th><tt>2_L_Palm_10_28_2008
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39 </tt></th></tr><tr><th><tt>L2S155</tt></th><th><tt>ACGATGCGACCA</tt></th><th><tt>GTGCCAGCMGCCGCGGTAA</tt></th><th><tt>left palm</tt></th><th><tt>2009</tt></th><th><tt>1</tt></th><th><tt>20</tt></th><th><tt>1</tt></th><th><tt>No</tt></th><th><tt>84</tt></th><th><tt>1_L_Palm_1_20_2009
e7324235f49e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c9bf747b23b4a9d6adc20c7740b9247c22654862
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40 </tt></th></tr><tr><th><tt>L2S309</tt></th><th><tt>CGTGCATTATCA</tt></th><th><tt>GTGCCAGCMGCCGCGGTAA</tt></th><th><tt>left palm</tt></th><th><tt>2009</tt></th><th><tt>1</tt></th><th><tt>20</tt></th><th><tt>2</tt></th><th><tt>No</tt></th><th><tt>84</tt></th><th><tt>2_L_Palm_1_20_2009
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41 </tt></th></tr><tr><th><tt>L2S175</tt></th><th><tt>AGCTATCCACGA</tt></th><th><tt>GTGCCAGCMGCCGCGGTAA</tt></th><th><tt>left palm</tt></th><th><tt>2009</tt></th><th><tt>2</tt></th><th><tt>17</tt></th><th><tt>1</tt></th><th><tt>No</tt></th><th><tt>112</tt></th><th><tt>1_L_Palm_2_17_2009
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42 </tt></th></tr><tr><th><tt>L2S204</tt></th><th><tt>ATGCAGCTCAGT</tt></th><th><tt>GTGCCAGCMGCCGCGGTAA</tt></th><th><tt>left palm</tt></th><th><tt>2009</tt></th><th><tt>3</tt></th><th><tt>17</tt></th><th><tt>1</tt></th><th><tt>No</tt></th><th><tt>140</tt></th><th><tt>1_L_Palm_3_17_2009
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43 </tt></th></tr><tr><th><tt>L2S357</tt></th><th><tt>CTAACGCAGTCA</tt></th><th><tt>GTGCCAGCMGCCGCGGTAA</tt></th><th><tt>left palm</tt></th><th><tt>2009</tt></th><th><tt>3</tt></th><th><tt>17</tt></th><th><tt>2</tt></th><th><tt>No</tt></th><th><tt>140</tt></th><th><tt>2_L_Palm_3_17_2009
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44 </tt></th></tr><tr><th><tt>L2S222</tt></th><th><tt>CACGTGACATGT</tt></th><th><tt>GTGCCAGCMGCCGCGGTAA</tt></th><th><tt>left palm</tt></th><th><tt>2009</tt></th><th><tt>4</tt></th><th><tt>14</tt></th><th><tt>1</tt></th><th><tt>No</tt></th><th><tt>168</tt></th><th><tt>1_L_Palm_4_14_2009
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45 </tt></th></tr><tr><th><tt>L2S382</tt></th><th><tt>CTCAATGACTCA</tt></th><th><tt>GTGCCAGCMGCCGCGGTAA</tt></th><th><tt>left palm</tt></th><th><tt>2009</tt></th><th><tt>4</tt></th><th><tt>14</tt></th><th><tt>2</tt></th><th><tt>No</tt></th><th><tt>168</tt></th><th><tt>2_L_Palm_4_14_2009
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46 </tt></th></tr><tr><th><tt>L3S242</tt></th><th><tt>ACAGTTGCGCGA</tt></th><th><tt>GTGCCAGCMGCCGCGGTAA</tt></th><th><tt>right palm</tt></th><th><tt>2008</tt></th><th><tt>10</tt></th><th><tt>28</tt></th><th><tt>1</tt></th><th><tt>Yes</tt></th><th><tt>0</tt></th><th><tt>1_R_Palm_10_28_2008
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47 </tt></th></tr><tr><th><tt>L3S378</tt></th><th><tt>ATCGATCTGTGG</tt></th><th><tt>GTGCCAGCMGCCGCGGTAA</tt></th><th><tt>right palm</tt></th><th><tt>2008</tt></th><th><tt>10</tt></th><th><tt>28</tt></th><th><tt>2</tt></th><th><tt>Yes</tt></th><th><tt>0</tt></th><th><tt>2_R_Palm_10_28_2008
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48 </tt></th></tr><tr><th><tt>L3S294</tt></th><th><tt>CACGACAGGCTA</tt></th><th><tt>GTGCCAGCMGCCGCGGTAA</tt></th><th><tt>right palm</tt></th><th><tt>2009</tt></th><th><tt>1</tt></th><th><tt>20</tt></th><th><tt>1</tt></th><th><tt>No</tt></th><th><tt>84</tt></th><th><tt>1_R_Palm_1_20_2009
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49 </tt></th></tr><tr><th><tt>L4S63</tt></th><th><tt>CTCGTGGAGTAG</tt></th><th><tt>GTGCCAGCMGCCGCGGTAA</tt></th><th><tt>right palm</tt></th><th><tt>2009</tt></th><th><tt>1</tt></th><th><tt>20</tt></th><th><tt>2</tt></th><th><tt>No</tt></th><th><tt>84</tt></th><th><tt>2_R_Palm_1_20_2009
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50 </tt></th></tr><tr><th><tt>L3S313</tt></th><th><tt>AGTGTCACGGTG</tt></th><th><tt>GTGCCAGCMGCCGCGGTAA</tt></th><th><tt>right palm</tt></th><th><tt>2009</tt></th><th><tt>2</tt></th><th><tt>17</tt></th><th><tt>1</tt></th><th><tt>No</tt></th><th><tt>112</tt></th><th><tt>1_R_Palm_2_17_2009
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51 </tt></th></tr><tr><th><tt>L3S341</tt></th><th><tt>CAAGTGAGAGAG</tt></th><th><tt>GTGCCAGCMGCCGCGGTAA</tt></th><th><tt>right palm</tt></th><th><tt>2009</tt></th><th><tt>3</tt></th><th><tt>17</tt></th><th><tt>1</tt></th><th><tt>No</tt></th><th><tt>140</tt></th><th><tt>1_R_Palm_3_17_2009
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52 </tt></th></tr><tr><th><tt>L4S112</tt></th><th><tt>GCGTTACACACA</tt></th><th><tt>GTGCCAGCMGCCGCGGTAA</tt></th><th><tt>right palm</tt></th><th><tt>2009</tt></th><th><tt>3</tt></th><th><tt>17</tt></th><th><tt>2</tt></th><th><tt>No</tt></th><th><tt>140</tt></th><th><tt>2_R_Palm_3_17_2009
e7324235f49e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c9bf747b23b4a9d6adc20c7740b9247c22654862
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53 </tt></th></tr><tr><th><tt>L3S360</tt></th><th><tt>CATCGTATCAAC</tt></th><th><tt>GTGCCAGCMGCCGCGGTAA</tt></th><th><tt>right palm</tt></th><th><tt>2009</tt></th><th><tt>4</tt></th><th><tt>14</tt></th><th><tt>1</tt></th><th><tt>No</tt></th><th><tt>168</tt></th><th><tt>1_R_Palm_4_14_2009
e7324235f49e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c9bf747b23b4a9d6adc20c7740b9247c22654862
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54 </tt></th></tr><tr><th><tt>L4S137</tt></th><th><tt>GAACTGTATCTC</tt></th><th><tt>GTGCCAGCMGCCGCGGTAA</tt></th><th><tt>right palm</tt></th><th><tt>2009</tt></th><th><tt>4</tt></th><th><tt>14</tt></th><th><tt>2</tt></th><th><tt>No</tt></th><th><tt>168</tt></th><th><tt>2_R_Palm_4_14_2009
e7324235f49e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c9bf747b23b4a9d6adc20c7740b9247c22654862
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55 </tt></th></tr><tr><th><tt>L5S104</tt></th><th><tt>CAGTGTCAGGAC</tt></th><th><tt>GTGCCAGCMGCCGCGGTAA</tt></th><th><tt>tongue</tt></th><th><tt>2008</tt></th><th><tt>10</tt></th><th><tt>28</tt></th><th><tt>1</tt></th><th><tt>Yes</tt></th><th><tt>0</tt></th><th><tt>1_Tong_10_28_2008
e7324235f49e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c9bf747b23b4a9d6adc20c7740b9247c22654862
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56 </tt></th></tr><tr><th><tt>L5S240</tt></th><th><tt>CTGGACTCATAG</tt></th><th><tt>GTGCCAGCMGCCGCGGTAA</tt></th><th><tt>tongue</tt></th><th><tt>2008</tt></th><th><tt>10</tt></th><th><tt>28</tt></th><th><tt>2</tt></th><th><tt>Yes</tt></th><th><tt>0</tt></th><th><tt>2_Tong_10_28_2008
e7324235f49e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c9bf747b23b4a9d6adc20c7740b9247c22654862
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57 </tt></th></tr><tr><th><tt>L5S155</tt></th><th><tt>ATCTTAGACTGC</tt></th><th><tt>GTGCCAGCMGCCGCGGTAA</tt></th><th><tt>tongue</tt></th><th><tt>2009</tt></th><th><tt>1</tt></th><th><tt>20</tt></th><th><tt>1</tt></th><th><tt>No</tt></th><th><tt>84</tt></th><th><tt>1_Tong_1_20_2009
e7324235f49e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c9bf747b23b4a9d6adc20c7740b9247c22654862
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58 </tt></th></tr><tr><th><tt>L6S20</tt></th><th><tt>GAGGCTCATCAT</tt></th><th><tt>GTGCCAGCMGCCGCGGTAA</tt></th><th><tt>tongue</tt></th><th><tt>2009</tt></th><th><tt>1</tt></th><th><tt>20</tt></th><th><tt>2</tt></th><th><tt>No</tt></th><th><tt>84</tt></th><th><tt>2_Tong_1_20_2009
e7324235f49e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c9bf747b23b4a9d6adc20c7740b9247c22654862
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59 </tt></th></tr><tr><th><tt>L5S174</tt></th><th><tt>CAGACATTGCGT</tt></th><th><tt>GTGCCAGCMGCCGCGGTAA</tt></th><th><tt>tongue</tt></th><th><tt>2009</tt></th><th><tt>2</tt></th><th><tt>17</tt></th><th><tt>1</tt></th><th><tt>No</tt></th><th><tt>112</tt></th><th><tt>1_Tong_2_17_2009
e7324235f49e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c9bf747b23b4a9d6adc20c7740b9247c22654862
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60 </tt></th></tr><tr><th><tt>L5S203</tt></th><th><tt>CGATGCACCAGA</tt></th><th><tt>GTGCCAGCMGCCGCGGTAA</tt></th><th><tt>tongue</tt></th><th><tt>2009</tt></th><th><tt>3</tt></th><th><tt>17</tt></th><th><tt>1</tt></th><th><tt>No</tt></th><th><tt>140</tt></th><th><tt>1_Tong_3_17_2009
e7324235f49e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c9bf747b23b4a9d6adc20c7740b9247c22654862
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61 </tt></th></tr><tr><th><tt>L6S68</tt></th><th><tt>GATACGTCCTGA</tt></th><th><tt>GTGCCAGCMGCCGCGGTAA</tt></th><th><tt>tongue</tt></th><th><tt>2009</tt></th><th><tt>3</tt></th><th><tt>17</tt></th><th><tt>2</tt></th><th><tt>No</tt></th><th><tt>140</tt></th><th><tt>2_Tong_3_17_2009
e7324235f49e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c9bf747b23b4a9d6adc20c7740b9247c22654862
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62 </tt></th></tr><tr><th><tt>L5S222</tt></th><th><tt>CTAGAGACTCTT</tt></th><th><tt>GTGCCAGCMGCCGCGGTAA</tt></th><th><tt>tongue</tt></th><th><tt>2009</tt></th><th><tt>4</tt></th><th><tt>14</tt></th><th><tt>1</tt></th><th><tt>No</tt></th><th><tt>168</tt></th><th><tt>1_Tong_4_14_2009
e7324235f49e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c9bf747b23b4a9d6adc20c7740b9247c22654862
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63 </tt></th></tr><tr><th><tt>L6S93</tt></th><th><tt>GATTAGCACTCT</tt></th><th><tt>GTGCCAGCMGCCGCGGTAA</tt></th><th><tt>tongue</tt></th><th><tt>2009</tt></th><th><tt>4</tt></th><th><tt>14</tt></th><th><tt>2</tt></th><th><tt>No</tt></th><th><tt>168</tt></th><th><tt>2_Tong_4_14_2009</tt></th></tr>
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64 </tr>
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65 </table>
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66
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67 </body>
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68 </html>