Mercurial > repos > iuc > qiime_upgma_cluster

annotate test-data/summarize_taxa/1_L6.txt @ 4:d44bd2602944 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit d41cdeeec9fd0eb5612df0d5af63a979d1c9ec87
author iuc
date Mon, 10 Jul 2017 16:44:06 -0400
parents e7324235f49e
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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e7324235f49e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c9bf747b23b4a9d6adc20c7740b9247c22654862
iuc
parents:
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1 #SampleID BarcodeSequence LinkerPrimerSequence SampleType year month day subject days_since_epoch Description Unclassified;Other k__Bacteria;Other k__Bacteria;p__Proteobacteria Unclassified;Other;Other k__Bacteria;Other;Other k__Bacteria;p__Proteobacteria;Other Unclassified;Other;Other;Other k__Bacteria;Other;Other;Other k__Bacteria;p__Proteobacteria;Other;Other Unclassified;Other;Other;Other;Other k__Bacteria;Other;Other;Other;Other k__Bacteria;p__Proteobacteria;Other;Other;Other Unclassified;Other;Other;Other;Other;Other k__Bacteria;Other;Other;Other;Other;Other k__Bacteria;p__Proteobacteria;Other;Other;Other;Other
e7324235f49e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c9bf747b23b4a9d6adc20c7740b9247c22654862
iuc
parents:
diff changeset
2 f1 ACACTGTTCATG GTGCCAGCMGCCGCGGTAA feces 2008 10 22 1 14174 fecal1 0.0 1.0 0.0 0.0 1.0 0.0 0.0 1.0 0.0 0.0 1.0 0.0 0.0 1.0 0.0
e7324235f49e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c9bf747b23b4a9d6adc20c7740b9247c22654862
iuc
parents:
diff changeset
3 f2 ACCAGACGATGC GTGCCAGCMGCCGCGGTAA feces 2008 10 23 1 14175 fecal2 0.0454545454545 0.954545454545 0.0 0.0454545454545 0.954545454545 0.0 0.0454545454545 0.954545454545 0.0 0.0454545454545 0.954545454545 0.0 0.0454545454545 0.954545454545 0.0
e7324235f49e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c9bf747b23b4a9d6adc20c7740b9247c22654862
iuc
parents:
diff changeset
4 f3 ACCAGACGATGC GTGCCAGCMGCCGCGGTAA feces 2008 10 23 1 14175 identical sequences to fecal2 0.0 1.0 0.0 0.0 1.0 0.0 0.0 1.0 0.0 0.0 1.0 0.0 0.0 1.0 0.0
e7324235f49e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c9bf747b23b4a9d6adc20c7740b9247c22654862
iuc
parents:
diff changeset
5 f4 ACCAGACGATGC GTGCCAGCMGCCGCGGTAA feces 2008 10 23 1 14175 all sequences identical, map to GG 295053 at 97 percent id 0.0 1.0 0.0 0.0 1.0 0.0 0.0 1.0 0.0 0.0 1.0 0.0 0.0 1.0 0.0
e7324235f49e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c9bf747b23b4a9d6adc20c7740b9247c22654862
iuc
parents:
diff changeset
6 p1 AACGCACGCTAG GTGCCAGCMGCCGCGGTAA L_palm 2008 10 21 1 14173 palm1, contains one randomly generated sequence 0.130434782609 0.869565217391 0.0 0.130434782609 0.869565217391 0.0 0.130434782609 0.869565217391 0.0 0.130434782609 0.869565217391 0.0 0.130434782609 0.869565217391 0.0
e7324235f49e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c9bf747b23b4a9d6adc20c7740b9247c22654862
iuc
parents:
diff changeset
7 p2 ACACTGTTCATG GTGCCAGCMGCCGCGGTAA L_palm 2008 10 22 1 14174 palm2 0.272727272727 0.681818181818 0.0454545454545 0.272727272727 0.681818181818 0.0454545454545 0.272727272727 0.681818181818 0.0454545454545 0.272727272727 0.681818181818 0.0454545454545 0.272727272727 0.681818181818 0.0454545454545
e7324235f49e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c9bf747b23b4a9d6adc20c7740b9247c22654862
iuc
parents:
diff changeset
8 t1 AGTGAGAGAAGC GTGCCAGCMGCCGCGGTAA Tongue 2008 10 21 1 14173 tongue1, contains one randomly generated sequence 0.869565217391 0.130434782609 0.0 0.869565217391 0.130434782609 0.0 0.869565217391 0.130434782609 0.0 0.869565217391 0.130434782609 0.0 0.869565217391 0.130434782609 0.0
e7324235f49e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c9bf747b23b4a9d6adc20c7740b9247c22654862
iuc
parents:
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9 t2 ATACTATTGCGC GTGCCAGCMGCCGCGGTAA Tongue 2008 10 22 1 14174 tongue2 0.681818181818 0.318181818182 0.0 0.681818181818 0.318181818182 0.0 0.681818181818 0.318181818182 0.0 0.681818181818 0.318181818182 0.0 0.681818181818 0.318181818182 0.0
e7324235f49e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c9bf747b23b4a9d6adc20c7740b9247c22654862
iuc
parents:
diff changeset
10 not16S.1 ATACTATTGCGC GTGCCAGCMGCCGCGGTAA Other 2008 10 22 1 14174 randomly generated sequence plus some variants, these should not map to 16S 0.909090909091 0.0909090909091 0.0 0.909090909091 0.0909090909091 0.0 0.909090909091 0.0909090909091 0.0 0.909090909091 0.0909090909091 0.0 0.909090909091 0.0909090909091 0.0