diff test-data/genome_results_outside_features.txt @ 0:ac607906f10a draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qualimap commit b4d43001cc0caa14d760c347fa1c416929f769b2"
author iuc
date Thu, 10 Oct 2019 17:42:04 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/genome_results_outside_features.txt	Thu Oct 10 17:42:04 2019 -0400
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+BamQC report
+-----------------------------------
+
+>>>>>>> Input
+
+     bam file = /tmp/tmprT4oZK/files/6/4/1/dataset_6416c0ca-3ecd-4273-ae01-22f2ac60965d.dat
+     outfile = results/outside_results.txt
+
+
+>>>>>>> Reference
+
+     number of bases = 650 bp
+     number of contigs = 1
+
+
+>>>>>>> Globals
+
+     number of windows = 325
+
+     number of reads = 100
+     number of mapped reads = 100 (100%)
+     number of secondary alignments = 1
+
+     number of mapped bases = 6,214 bp
+     number of sequenced bases = 2,364 bp
+     number of aligned bases = 0 bp
+     number of duplicated reads (estimated) = 4
+     duplication rate = 14.29%
+
+
+>>>>>>> Globals outside
+
+     regions size = 350 (53.85%)
+     number of mapped reads = 18 (18%)
+
+
+>>>>>>> Insert size
+
+     mean insert size = 0
+     std insert size = 0
+     median insert size = 0
+
+
+>>>>>>> Mapping quality
+
+     mean mapping quality = 255
+
+
+>>>>>>> ACTG content
+
+     number of A's = 667 bp (28.21%)
+     number of C's = 645 bp (27.28%)
+     number of T's = 512 bp (21.66%)
+     number of G's = 540 bp (22.84%)
+     number of N's = 0 bp (0%)
+
+     GC percentage = 50.13%
+
+
+>>>>>>> Mismatches and indels
+
+    general error rate = 0.0021
+    number of mismatches = 13
+
+
+>>>>>>> Coverage
+
+     mean coverageData = 17.7543X
+     std coverageData = 16.4764X
+
+     There is a 10.58% of reference with a coverageData >= 1X
+     There is a 10.58% of reference with a coverageData >= 2X
+     There is a 10.58% of reference with a coverageData >= 3X
+     There is a 10.58% of reference with a coverageData >= 4X
+     There is a 10.58% of reference with a coverageData >= 5X
+     There is a 10.58% of reference with a coverageData >= 6X
+     There is a 10.58% of reference with a coverageData >= 7X
+     There is a 10.58% of reference with a coverageData >= 8X
+     There is a 10.58% of reference with a coverageData >= 9X
+     There is a 10.58% of reference with a coverageData >= 10X
+     There is a 10.58% of reference with a coverageData >= 11X
+     There is a 10.58% of reference with a coverageData >= 12X
+     There is a 10.58% of reference with a coverageData >= 13X
+     There is a 10.58% of reference with a coverageData >= 14X
+     There is a 10.58% of reference with a coverageData >= 15X
+     There is a 10.58% of reference with a coverageData >= 16X
+     There is a 10.58% of reference with a coverageData >= 17X
+     There is a 10.58% of reference with a coverageData >= 18X
+     There is a 10.58% of reference with a coverageData >= 19X
+     There is a 10.58% of reference with a coverageData >= 20X
+     There is a 10.58% of reference with a coverageData >= 21X
+     There is a 10.58% of reference with a coverageData >= 22X
+     There is a 10.58% of reference with a coverageData >= 23X
+     There is a 10.58% of reference with a coverageData >= 24X
+     There is a 10.58% of reference with a coverageData >= 25X
+     There is a 10.58% of reference with a coverageData >= 26X
+     There is a 10.58% of reference with a coverageData >= 27X
+     There is a 10.58% of reference with a coverageData >= 28X
+     There is a 10.58% of reference with a coverageData >= 29X
+     There is a 10.58% of reference with a coverageData >= 30X
+     There is a 10.58% of reference with a coverageData >= 31X
+     There is a 10.1% of reference with a coverageData >= 32X
+     There is a 9.62% of reference with a coverageData >= 33X
+     There is a 9.13% of reference with a coverageData >= 34X
+     There is a 7.21% of reference with a coverageData >= 35X
+     There is a 5.29% of reference with a coverageData >= 36X
+     There is a 3.37% of reference with a coverageData >= 37X
+     There is a 1.44% of reference with a coverageData >= 38X
+     There is a 0.96% of reference with a coverageData >= 39X
+     There is a 0% of reference with a coverageData >= 40X
+     There is a 0% of reference with a coverageData >= 41X
+     There is a 0% of reference with a coverageData >= 42X
+     There is a 0% of reference with a coverageData >= 43X
+     There is a 0% of reference with a coverageData >= 44X
+     There is a 0% of reference with a coverageData >= 45X
+     There is a 0% of reference with a coverageData >= 46X
+     There is a 0% of reference with a coverageData >= 47X
+     There is a 0% of reference with a coverageData >= 48X
+     There is a 0% of reference with a coverageData >= 49X
+     There is a 0% of reference with a coverageData >= 50X
+     There is a 0% of reference with a coverageData >= 51X
+
+
+>>>>>>> Coverage per contig
+
+	test_chromosome	4424	6214	1.404611211573237	3.9981701358234454
+
+