Mercurial > repos > iuc > qualimap_bamqc
view test-data/genome_results_outside_features.txt @ 3:5f8e69cc4c6e draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qualimap commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
| author | iuc |
|---|---|
| date | Sat, 16 May 2020 09:47:55 -0400 |
| parents | ac607906f10a |
| children |
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BamQC report ----------------------------------- >>>>>>> Input bam file = /tmp/tmprT4oZK/files/6/4/1/dataset_6416c0ca-3ecd-4273-ae01-22f2ac60965d.dat outfile = results/outside_results.txt >>>>>>> Reference number of bases = 650 bp number of contigs = 1 >>>>>>> Globals number of windows = 325 number of reads = 100 number of mapped reads = 100 (100%) number of secondary alignments = 1 number of mapped bases = 6,214 bp number of sequenced bases = 2,364 bp number of aligned bases = 0 bp number of duplicated reads (estimated) = 4 duplication rate = 14.29% >>>>>>> Globals outside regions size = 350 (53.85%) number of mapped reads = 18 (18%) >>>>>>> Insert size mean insert size = 0 std insert size = 0 median insert size = 0 >>>>>>> Mapping quality mean mapping quality = 255 >>>>>>> ACTG content number of A's = 667 bp (28.21%) number of C's = 645 bp (27.28%) number of T's = 512 bp (21.66%) number of G's = 540 bp (22.84%) number of N's = 0 bp (0%) GC percentage = 50.13% >>>>>>> Mismatches and indels general error rate = 0.0021 number of mismatches = 13 >>>>>>> Coverage mean coverageData = 17.7543X std coverageData = 16.4764X There is a 10.58% of reference with a coverageData >= 1X There is a 10.58% of reference with a coverageData >= 2X There is a 10.58% of reference with a coverageData >= 3X There is a 10.58% of reference with a coverageData >= 4X There is a 10.58% of reference with a coverageData >= 5X There is a 10.58% of reference with a coverageData >= 6X There is a 10.58% of reference with a coverageData >= 7X There is a 10.58% of reference with a coverageData >= 8X There is a 10.58% of reference with a coverageData >= 9X There is a 10.58% of reference with a coverageData >= 10X There is a 10.58% of reference with a coverageData >= 11X There is a 10.58% of reference with a coverageData >= 12X There is a 10.58% of reference with a coverageData >= 13X There is a 10.58% of reference with a coverageData >= 14X There is a 10.58% of reference with a coverageData >= 15X There is a 10.58% of reference with a coverageData >= 16X There is a 10.58% of reference with a coverageData >= 17X There is a 10.58% of reference with a coverageData >= 18X There is a 10.58% of reference with a coverageData >= 19X There is a 10.58% of reference with a coverageData >= 20X There is a 10.58% of reference with a coverageData >= 21X There is a 10.58% of reference with a coverageData >= 22X There is a 10.58% of reference with a coverageData >= 23X There is a 10.58% of reference with a coverageData >= 24X There is a 10.58% of reference with a coverageData >= 25X There is a 10.58% of reference with a coverageData >= 26X There is a 10.58% of reference with a coverageData >= 27X There is a 10.58% of reference with a coverageData >= 28X There is a 10.58% of reference with a coverageData >= 29X There is a 10.58% of reference with a coverageData >= 30X There is a 10.58% of reference with a coverageData >= 31X There is a 10.1% of reference with a coverageData >= 32X There is a 9.62% of reference with a coverageData >= 33X There is a 9.13% of reference with a coverageData >= 34X There is a 7.21% of reference with a coverageData >= 35X There is a 5.29% of reference with a coverageData >= 36X There is a 3.37% of reference with a coverageData >= 37X There is a 1.44% of reference with a coverageData >= 38X There is a 0.96% of reference with a coverageData >= 39X There is a 0% of reference with a coverageData >= 40X There is a 0% of reference with a coverageData >= 41X There is a 0% of reference with a coverageData >= 42X There is a 0% of reference with a coverageData >= 43X There is a 0% of reference with a coverageData >= 44X There is a 0% of reference with a coverageData >= 45X There is a 0% of reference with a coverageData >= 46X There is a 0% of reference with a coverageData >= 47X There is a 0% of reference with a coverageData >= 48X There is a 0% of reference with a coverageData >= 49X There is a 0% of reference with a coverageData >= 50X There is a 0% of reference with a coverageData >= 51X >>>>>>> Coverage per contig test_chromosome 4424 6214 1.404611211573237 3.9981701358234454