Mercurial > repos > iuc > qualimap_rnaseq

diff test-data/rnaseq_qc_results_custom.txt @ 0:613e6446ea5d draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qualimap commit b4d43001cc0caa14d760c347fa1c416929f769b2"
author iuc
date Thu, 10 Oct 2019 17:41:10 -0400
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children 43a1c3e1a4d0
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/rnaseq_qc_results_custom.txt	Thu Oct 10 17:41:10 2019 -0400
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+RNA-Seq QC report
+-----------------------------------
+
+>>>>>>> Input
+
+    bam file = /tmp/tmp_CFvEQ/files/000/dataset_49.dat
+    gff file = /tmp/tmp_CFvEQ/files/000/dataset_2.dat
+    counting algorithm = proportional
+    protocol = strand-specific-forward
+
+
+>>>>>>> Reads alignment
+
+    reads aligned (left/right) = 0 / 0
+    read pairs aligned  = 0
+    total alignments = 101
+    secondary alignments = 1
+    non-unique alignments = 0
+    aligned to genes  = 46
+    ambiguous alignments = 0
+    no feature assigned = 55
+    not aligned = 0
+
+
+>>>>>>> Reads genomic origin
+
+    exonic =  46 (45.54%)
+    intronic = 0 (0%)
+    intergenic = 55 (54.46%)
+    overlapping exon = 0 (0%)
+
+
+>>>>>>> Transcript coverage profile
+
+    5' bias = NaN
+    3' bias = NaN
+    5'-3' bias = NaN
+
+
+>>>>>>> Junction analysis
+
+    reads at junctions = 53
+
+    CTTT : 47.17%
+    CCAC : 47.17%
+    GCAC : 1.89%
+    CTAC : 1.89%
+    GAAT : 1.89%