Mercurial > repos > iuc > qualimap_rnaseq
view test-data/genome_results_inside_features.txt @ 1:ce0da6c9f49e draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qualimap commit 08beeabf7a8e91d0e95f5cdb71249dd6efe2bd46"
| author | iuc |
|---|---|
| date | Tue, 29 Oct 2019 09:14:03 -0400 |
| parents | 613e6446ea5d |
| children |
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BamQC report ----------------------------------- >>>>>>> Input bam file = /tmp/tmpB4Sf0A/files/e/d/7/dataset_ed7510d4-c8f3-41fc-8cc1-3b854d9bdf14.dat outfile = results/genome_results.txt >>>>>>> Reference number of bases = 650 bp number of contigs = 1 >>>>>>> Globals number of windows = 325 number of reads = 100 number of mapped reads = 100 (100%) number of secondary alignments = 1 number of mapped bases = 6,451 bp number of sequenced bases = 5,101 bp number of aligned bases = 0 bp number of duplicated reads (estimated) = 14 duplication rate = 16.18% >>>>>>> Globals inside regions size = 300 (46.15%) number of mapped reads = 82 (82%) >>>>>>> Insert size mean insert size = 0 std insert size = 0 median insert size = 0 >>>>>>> Mapping quality mean mapping quality = 251.3687 >>>>>>> ACTG content number of A's = 1,243 bp (24.37%) number of C's = 1,257 bp (24.64%) number of T's = 985 bp (19.31%) number of G's = 1,616 bp (31.68%) number of N's = 0 bp (0%) GC percentage = 56.32% >>>>>>> Mismatches and indels general error rate = 0.0211 number of mismatches = 136 >>>>>>> Coverage mean coverageData = 21.5033X std coverageData = 15.658X There is a 66% of reference with a coverageData >= 1X There is a 65.33% of reference with a coverageData >= 2X There is a 65% of reference with a coverageData >= 3X There is a 64.33% of reference with a coverageData >= 4X There is a 63.33% of reference with a coverageData >= 5X There is a 59.67% of reference with a coverageData >= 6X There is a 57.67% of reference with a coverageData >= 7X There is a 57.67% of reference with a coverageData >= 8X There is a 56% of reference with a coverageData >= 9X There is a 55% of reference with a coverageData >= 10X There is a 54.33% of reference with a coverageData >= 11X There is a 54% of reference with a coverageData >= 12X There is a 53.33% of reference with a coverageData >= 13X There is a 53% of reference with a coverageData >= 14X There is a 52.33% of reference with a coverageData >= 15X There is a 52.33% of reference with a coverageData >= 16X There is a 51.67% of reference with a coverageData >= 17X There is a 51% of reference with a coverageData >= 18X There is a 50% of reference with a coverageData >= 19X There is a 50% of reference with a coverageData >= 20X There is a 50% of reference with a coverageData >= 21X There is a 49.67% of reference with a coverageData >= 22X There is a 49.33% of reference with a coverageData >= 23X There is a 48.33% of reference with a coverageData >= 24X There is a 48% of reference with a coverageData >= 25X There is a 45.33% of reference with a coverageData >= 26X There is a 43% of reference with a coverageData >= 27X There is a 42% of reference with a coverageData >= 28X There is a 39.33% of reference with a coverageData >= 29X There is a 35.67% of reference with a coverageData >= 30X There is a 32.33% of reference with a coverageData >= 31X There is a 25.67% of reference with a coverageData >= 32X There is a 16.67% of reference with a coverageData >= 33X There is a 13% of reference with a coverageData >= 34X There is a 11.33% of reference with a coverageData >= 35X There is a 10% of reference with a coverageData >= 36X There is a 5.67% of reference with a coverageData >= 37X There is a 3% of reference with a coverageData >= 38X There is a 0% of reference with a coverageData >= 39X There is a 0% of reference with a coverageData >= 40X There is a 0% of reference with a coverageData >= 41X There is a 0% of reference with a coverageData >= 42X There is a 0% of reference with a coverageData >= 43X There is a 0% of reference with a coverageData >= 44X There is a 0% of reference with a coverageData >= 45X There is a 0% of reference with a coverageData >= 46X There is a 0% of reference with a coverageData >= 47X There is a 0% of reference with a coverageData >= 48X There is a 0% of reference with a coverageData >= 49X There is a 0% of reference with a coverageData >= 50X There is a 0% of reference with a coverageData >= 51X >>>>>>> Coverage per contig test_chromosome 300 6451 21.503333333333334 15.658011438947867