Mercurial > repos > iuc > quast
comparison test-data/test2_report.tab @ 9:45924fa8d8c5 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9e4867db42282a980f1149711159fa811b2d8414"
author | iuc |
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date | Mon, 08 Nov 2021 09:03:00 +0000 |
parents | |
children | 3061c8b029e5 |
comparison
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8:ebb0dcdb621a | 9:45924fa8d8c5 |
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1 Assembly contig1 contig2 | |
2 # contigs (>= 0 bp) 3 1 | |
3 # contigs (>= 1000 bp) 3 1 | |
4 Total length (>= 0 bp) 6710 6650 | |
5 Total length (>= 1000 bp) 6710 6650 | |
6 # contigs 3 1 | |
7 Largest contig 3980 6650 | |
8 Total length 6710 6650 | |
9 Reference length 6650 6650 | |
10 GC (%) 51.28 52.00 | |
11 Reference GC (%) 52.00 52.00 | |
12 N50 3980 6650 | |
13 NG50 3980 6650 | |
14 N75 1610 6650 | |
15 NG75 1610 6650 | |
16 L50 1 1 | |
17 LG50 1 1 | |
18 L75 2 1 | |
19 LG75 2 1 | |
20 # misassemblies 0 0 | |
21 # misassembled contigs 0 0 | |
22 Misassembled contigs length 0 0 | |
23 # local misassemblies 0 0 | |
24 # scaffold gap ext. mis. 0 0 | |
25 # scaffold gap loc. mis. 0 0 | |
26 # unaligned mis. contigs 0 0 | |
27 # unaligned contigs 0 + 1 part 0 + 0 part | |
28 Unaligned length 1950 0 | |
29 Genome fraction (%) 71.579 100.000 | |
30 Duplication ratio 1.000 1.000 | |
31 # N's per 100 kbp 0.00 0.00 | |
32 # mismatches per 100 kbp 0.00 0.00 | |
33 # indels per 100 kbp 0.00 0.00 | |
34 # genomic features 7 + 7 part 13 + 1 part | |
35 Largest alignment 2030 6650 | |
36 Total aligned length 4760 6650 | |
37 NA50 1610 6650 | |
38 NGA50 1610 6650 | |
39 NA75 - 6650 | |
40 NGA75 - 6650 | |
41 LA50 2 1 | |
42 LGA50 2 1 | |
43 LA75 - 1 | |
44 LGA75 - 1 | |
45 K-mer-based compl. (%) 68.09 100.00 | |
46 K-mer-based cor. length (%) 100.00 100.00 | |
47 K-mer-based mis. length (%) 0.00 0.00 | |
48 # k-mer-based misjoins 0 0 |