Mercurial > repos > iuc > quast

comparison test-data/test5.tab @ 9:45924fa8d8c5 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9e4867db42282a980f1149711159fa811b2d8414"
author iuc
date Mon, 08 Nov 2021 09:03:00 +0000
parents
children 3061c8b029e5
comparison
equal deleted inserted replaced
8:ebb0dcdb621a 9:45924fa8d8c5
1 Assembly contig1 contig2
2 # contigs (>= 0 bp) 3 1
3 # contigs (>= 1000 bp) 3 1
4 Total length (>= 0 bp) 6710 6650
5 Total length (>= 1000 bp) 6710 6650
6 # contigs 3 1
7 Largest contig 3980 6650
8 Total length 6710 6650
9 Reference length 6650 6650
10 GC (%) 51.28 52.00
11 Reference GC (%) 52.00 52.00
12 N50 3980 6650
13 NG50 3980 6650
14 N75 1610 6650
15 NG75 1610 6650
16 L50 1 1
17 LG50 1 1
18 L75 2 1
19 LG75 2 1
20 # total reads 331 331
21 # left 0 0
22 # right 0 0
23 Mapped (%) 2.72 2.42
24 Reference mapped (%) 2.42 2.42
25 Properly paired (%) 0.0 0.0
26 Reference properly paired (%) 0.0 0.0
27 Avg. coverage depth 0 1
28 Reference avg. coverage depth 1 1
29 Coverage >= 1x (%) 42.22 48.17
30 Reference coverage >= 1x (%) 48.17 48.17
31 # misassemblies 0 0
32 # misassembled contigs 0 0
33 Misassembled contigs length 0 0
34 # local misassemblies 0 0
35 # scaffold gap ext. mis. 0 0
36 # scaffold gap loc. mis. 0 0
37 # unaligned mis. contigs 0 0
38 # unaligned contigs 0 + 1 part 0 + 0 part
39 Unaligned length 1950 0
40 Genome fraction (%) 71.579 100.000
41 Duplication ratio 1.000 1.000
42 # N's per 100 kbp 0.00 0.00
43 # mismatches per 100 kbp 0.00 0.00
44 # indels per 100 kbp 0.00 0.00
45 Largest alignment 2030 6650
46 Total aligned length 4760 6650
47 NA50 1610 6650
48 NGA50 1610 6650
49 NA75 - 6650
50 NGA75 - 6650
51 LA50 2 1
52 LGA50 2 1
53 LA75 - 1
54 LGA75 - 1