Mercurial > repos > iuc > quast

diff quast.xml @ 2:2f581f956e1c draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 930a43568ac0d4d32dde38a56fbb0b826f8f591b
author iuc
date Fri, 04 Nov 2016 05:06:15 -0400
parents 0edbf19cf5eb
children 6fcbee531de6
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line diff
--- a/quast.xml	Wed Nov 02 09:42:45 2016 -0400
+++ b/quast.xml	Fri Nov 04 05:06:15 2016 -0400
@@ -11,6 +11,7 @@
     </stdio>
     <command>
     <![CDATA[
+        #import re
         quast
         -o outputdir
         #if $gene_selection == "eukaryote":
@@ -32,7 +33,8 @@
         #end if
         --min-contig $min_contig
         -l
-        #set names = ','.join( ['"'+str( $x.input.element_identifier)+'"' for $x in $files ])
+        #set names = ','.join( ['"'+ re.sub('[^\w\-_]', '_', str( $x.input.element_identifier))+'"' for $x in $files ])
+        
         $names
         --contig-thresholds $threshold_contig
         #for $k in $files: