Mercurial > repos > iuc > quast
diff macros.xml @ 14:3061c8b029e5 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit b4d6989e1e185120ce470df5c2b0d93330d5e124
author | iuc |
---|---|
date | Fri, 05 Aug 2022 15:21:27 +0000 |
parents | 675488238c96 |
children | 72472698a2df |
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--- a/macros.xml Fri Mar 25 17:36:59 2022 +0000 +++ b/macros.xml Fri Aug 05 15:21:27 2022 +0000 @@ -1,8 +1,12 @@ <macros> + <token name="@TOOL_VERSION@">5.2.0</token> + <token name="@VERSION_SUFFIX@">0</token> + <token name="@PROFILE@">21.01</token> <xml name="requirements"> <requirements> <requirement type="package" version="@TOOL_VERSION@">quast</requirement> - <requirement type="package" version="0.69.8">circos</requirement> + <requirement type="package" version="0.7.17">bwa</requirement> + <requirement type="package" version="2.30.0">bedtools</requirement> </requirements> </xml> <xml name="bio_tools"> @@ -10,8 +14,6 @@ <xref type="bio.tools">quast</xref> </xrefs> </xml> - <token name="@TOOL_VERSION@">5.0.2</token> - <token name="@VERSION_SUFFIX@">5</token> <xml name="gene_thresholds"> <param name="gene_thresholds" argument="--gene-thresholds" type="text" value="0,300,1500,3000" label="Comma-separated list of thresholds (in bp) for gene lengths to find with a finding tool"/> </xml> @@ -23,4 +25,8 @@ <citation type="doi">10.1093/bioinformatics/btt086</citation> </citations> </xml> + <xml name="min_identity_macros" token_value=""> + <param argument="--min-identity" type="float" value="@VALUE@" min="80" max="100" label="Minimum IDY% considered as proper alignment" help="Alignments with IDY% worse than this value will be filtered. Note that all alignments + with IDY% less than 80.0% will be filtered regardless of this threshold. "/> + </xml> </macros>