Mercurial > repos > iuc > quast
diff test-data/test10_tabular_report.tab @ 14:3061c8b029e5 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit b4d6989e1e185120ce470df5c2b0d93330d5e124
author | iuc |
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date | Fri, 05 Aug 2022 15:21:27 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test10_tabular_report.tab Fri Aug 05 15:21:27 2022 +0000 @@ -0,0 +1,77 @@ +Assembly contig1 contig2 +# contigs (>= 0 bp) 3 1 +# contigs (>= 1000 bp) 3 1 +Total length (>= 0 bp) 6710 6650 +Total length (>= 1000 bp) 6710 6650 +# contigs 3 1 +Largest contig 3980 6650 +Total length 6710 6650 +Reference length - - +Estimated reference length - - +GC (%) 51.28 52.00 +Reference GC (%) - - +N50 3980 6650 +NG50 - - +N80 1610 6650 +NG80 - - +auN 2934.0 6650.0 +auNG - - +L50 1 1 +LG50 - - +L80 2 1 +LG80 - - +# total reads - - +# left - - +# right - - +Mapped (%) - - +Reference mapped (%) - - +Properly paired (%) - - +Reference properly paired (%) - - +Avg. coverage depth - - +Reference avg. coverage depth - - +Coverage >= 1x (%) - - +Reference coverage >= 1x (%) - - +# large blocks misassemblies - - +# misassemblies - - +# misassembled contigs - - +Misassembled contigs length - - +# local misassemblies - - +# scaffold gap ext. mis. - - +# scaffold gap loc. mis. - - +# structural variations - - +# possible TEs - - +# unaligned mis. contigs - - +# unaligned contigs - - +Unaligned length - - +Genome fraction (%) - - +Duplication ratio - - +Avg contig read support - - +# N's per 100 kbp 0.00 0.00 +# mismatches per 100 kbp - - +# indels per 100 kbp - - +# genomic features - - +# operons - - +Complete BUSCO (%) - - +Partial BUSCO (%) - - +# predicted genes (unique) - - +# predicted genes (>= 0 bp) - - +# predicted genes (>= 300 bp) - - +# predicted genes (>= 1500 bp) - - +# predicted genes (>= 3000 bp) - - +# predicted rRNA genes - - +Largest alignment - - +Total aligned length - - +NA50 - - +NGA50 - - +NA80 - - +NGA80 - - +auNA - - +auNGA - - +LA50 - - +LGA50 - - +LA80 - - +LGA80 - - +K-mer-based compl. (%) - - +K-mer-based cor. length (%) - - +K-mer-based mis. length (%) - - +# k-mer-based misjoins - -