query_tabular: macros.xml annotate

annotate macros.xml @ 2:fb8484ee54d8 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 4a3c9f195ba5d899b1a1ce5e80281cdf230f456a

author	iuc
date	Mon, 23 Oct 2017 13:27:42 -0400
parents	8a33b442ecd9
children	973f03d82c86

rev	line source
0 3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	1 <macros>
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	2 <token name="@LINEFILTERS@">
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	3 <![CDATA[
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	4 ## set linefilters to the
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	5 #set $input_filters = []
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	6 #for $fi in $linefilters:
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	7 #if $fi.filter.filter_type == 'skip':
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	8 #set $skip_lines = None
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	9 #if str($fi.filter.skip_lines) != '':
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	10 #set $skip_lines = int($fi.filter.skip_lines)
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	11 #elif $tbl.table.metadata.comment_lines and $tbl.table.metadata.comment_lines > 0:
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	12 #set $skip_lines = int($tbl.table.metadata.comment_lines)
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	13 #end if
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	14 #if $skip_lines is not None:
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	15 #set $filter_dict = dict()
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	16 #set $filter_dict['filter'] = str($fi.filter.filter_type)
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	17 #set $filter_dict['count'] = $skip_lines
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	18 #silent $input_filters.append($filter_dict)
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	19 #end if
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	20 #elif $fi.filter.filter_type == 'comment':
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	21 #set $filter_dict = dict()
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	22 #set $filter_dict['filter'] = 'regex'
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	23 #set $filter_dict['pattern'] = '^(%s).*$' % '\|'.join([chr(int(x)).replace('\|','[\|]') for x in (str($fi.filter.comment_char)).split(',')])
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	24 #set $filter_dict['action'] = 'exclude_match'
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	25 #silent $input_filters.append($filter_dict)
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	26 #elif $fi.filter.filter_type == 'regex':
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	27 #set $filter_dict = dict()
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	28 #set $filter_dict['filter'] = str($fi.filter.filter_type)
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	29 #set $filter_dict['pattern'] = str($fi.filter.regex_pattern)
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	30 #set $filter_dict['action'] = str($fi.filter.regex_action)
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	31 #silent $input_filters.append($filter_dict)
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	32 #elif $fi.filter.filter_type == 'select_columns':
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	33 #set $filter_dict = dict()
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	34 #set $filter_dict['filter'] = str($fi.filter.filter_type)
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	35 #set $filter_dict['columns'] = [int(str($ci).replace('c','')) for $ci in str($fi.filter.columns).split(',')]
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	36 #silent $input_filters.append($filter_dict)
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	37 #elif $fi.filter.filter_type == 'replace':
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	38 #set $filter_dict = dict()
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	39 #set $filter_dict['filter'] = str($fi.filter.filter_type)
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	40 #set $filter_dict['column'] = int(str($fi.filter.column).replace('c',''))
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	41 #set $filter_dict['pattern'] = str($fi.filter.regex_pattern)
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	42 #set $filter_dict['replace'] = str($fi.filter.regex_replace)
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	43 #silent $input_filters.append($filter_dict)
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	44 #elif str($fi.filter.filter_type).endswith('pend_line_num'):
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	45 #set $filter_dict = dict()
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	46 #set $filter_dict['filter'] = str($fi.filter.filter_type)
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	47 #silent $input_filters.append($filter_dict)
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	48 #elif str($fi.filter.filter_type).endswith('pend_text'):
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	49 #set $filter_dict = dict()
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	50 #set $filter_dict['filter'] = str($fi.filter.filter_type)
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	51 #set $filter_dict['column_text'] = str($fi.filter.column_text)
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	52 #silent $input_filters.append($filter_dict)
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	53 #elif $fi.filter.filter_type == 'normalize':
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	54 #set $filter_dict = dict()
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	55 #set $filter_dict['filter'] = str($fi.filter.filter_type)
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	56 #set $filter_dict['columns'] = [int(str($ci).replace('c','')) for $ci in str($fi.filter.columns).split(',')]
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	57 #set $filter_dict['separator'] = str($fi.filter.separator)
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	58 #silent $input_filters.append($filter_dict)
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	59 #end if
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	60 #end for
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	61 ]]>
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	62 </token>
1 8a33b442ecd9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	63 <token name="@RESULT_HEADER@">
8a33b442ecd9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	64 <![CDATA[
8a33b442ecd9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	65 #if $query_result.header == 'yes':
8a33b442ecd9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	66 #if $query_result.header_prefix:
8a33b442ecd9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	67 #set $header_prefix = chr(int(str($query_result.header_prefix)))
8a33b442ecd9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	68 --comment_char='$header_prefix'
8a33b442ecd9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	69 #end if
8a33b442ecd9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	70 #else
8a33b442ecd9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	71 --no_header
8a33b442ecd9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	72 #end if
8a33b442ecd9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	73 ]]>
8a33b442ecd9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	74 </token>
8a33b442ecd9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	75 <xml name="comment_char_options">
8a33b442ecd9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	76 <option value="62">></option>
8a33b442ecd9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	77 <option value="64">@</option>
8a33b442ecd9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	78 <option value="43">+</option>
8a33b442ecd9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	79 <option value="60"><</option>
8a33b442ecd9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	80 <option value="42">*</option>
8a33b442ecd9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	81 <option value="45">-</option>
8a33b442ecd9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	82 <option value="61">=</option>
8a33b442ecd9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	83 <option value="124">\|</option>
8a33b442ecd9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	84 <option value="63">?</option>
8a33b442ecd9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	85 <option value="36">$</option>
8a33b442ecd9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	86 <option value="46">.</option>
8a33b442ecd9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	87 <option value="58">:</option>
8a33b442ecd9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	88 <option value="38">&</option>
8a33b442ecd9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	89 <option value="37">%</option>
8a33b442ecd9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	90 <option value="94">^</option>
8a33b442ecd9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	91 <option value="35" selected="true">#</option>
8a33b442ecd9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	92 <option value="33">!</option>
8a33b442ecd9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	93 </xml>
8a33b442ecd9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	94 <xml name="result_results_header_line">
8a33b442ecd9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	95 <conditional name="query_result">
8a33b442ecd9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	96 <param name="header" type="select" label="include query result column headers">
8a33b442ecd9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	97 <option value="yes">Yes</option>
8a33b442ecd9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	98 <option value="no">No</option>
8a33b442ecd9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	99 </param>
8a33b442ecd9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	100 <when value="yes">
8a33b442ecd9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	101 <param name="header_prefix" type="select" optional="true" label="Prefix character for column_header line">
8a33b442ecd9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	102 <option value="">no comment character prefix</option>
8a33b442ecd9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	103 <expand macro="comment_char_options" />
8a33b442ecd9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	104 </param>
8a33b442ecd9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	105 </when>
8a33b442ecd9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	106 <when value="no"/>
8a33b442ecd9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	107 </conditional>
8a33b442ecd9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	108 </xml>
0 3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	109 <xml name="macro_line_filters">
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	110 <repeat name="linefilters" title="Filter Tabular Input Lines">
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	111 <conditional name="filter">
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	112 <param name="filter_type" type="select" label="Filter By">
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	113 <option value="skip">skip leading lines</option>
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	114 <option value="comment">comment char</option>
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	115 <option value="regex">by regex expression matching</option>
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	116 <option value="select_columns">select columns</option>
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	117 <option value="replace">regex replace value in column</option>
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	118 <option value="prepend_line_num">prepend a line number column</option>
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	119 <option value="append_line_num">append a line number column</option>
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	120 <option value="prepend_text">prepend a column with the given text</option>
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	121 <option value="append_text">append a column with the given text</option>
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	122 <option value="normalize">normalize list columns, replicates row for each item in list</option>
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	123 </param>
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	124 <when value="skip">
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	125 <param name="skip_lines" type="integer" value="" min="0" optional="true" label="Skip lines"
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	126 help="Leave blank to use the comment lines metadata for this dataset" />
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	127 </when>
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	128 <when value="comment">
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	129 <param name="comment_char" type="select" display="checkboxes" multiple="True" label="Ignore lines beginning with these characters" help="lines beginning with these are skipped">
1 8a33b442ecd9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 81f69ad5f39223059c40501e55ac777d3feca845 iuc parents: 0 diff changeset	130 <expand macro="comment_char_options" />
0 3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	131 </param>
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	132 </when>
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	133 <when value="prepend_line_num"/>
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	134 <when value="append_line_num"/>
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	135 <when value="prepend_text">
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	136 <param name="column_text" type="text" value="" label="text for column">
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	137 </param>
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	138 </when>
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	139 <when value="append_text">
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	140 <param name="column_text" type="text" value="" label="text for column">
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	141 </param>
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	142 </when>
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	143 <when value="regex">
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	144 <param name="regex_pattern" type="text" value="" label="regex pattern">
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	145 <sanitizer sanitize="False"/>
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	146 </param>
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	147 <param name="regex_action" type="select" label="action for regex match">
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	148 <option value="exclude_match">exclude line on pattern match</option>
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	149 <option value="include_match">include line on pattern match</option>
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	150 <option value="exclude_find">exclude line if pattern found</option>
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	151 <option value="include_find">include line if pattern found</option>
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	152 </param>
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	153 </when>
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	154 <when value="select_columns">
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	155 <param name="columns" type="text" value="" label="enter column numbers to keep"
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	156 help="example: 1,4,2 or c1,c4,c2(selects the first,fourth, and second columns)">
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	157 <validator type="regex" message="Column ordinal positions separated by commas">^(c?[1-9]\d)(,c?[1-9]\d)*$</validator>
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	158 </param>
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	159 </when>
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	160 <when value="replace">
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	161 <param name="column" type="text" value="" label="enter column number to replace"
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	162 help="example: 1 or c1 (selects the first column)">
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	163 <validator type="regex" message="Column ordinal position separated by commas">^(c?[1-9]\d*)$</validator>
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	164 </param>
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	165 <param name="regex_pattern" type="text" value="" label="regex pattern">
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	166 <sanitizer sanitize="False"/>
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	167 </param>
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	168 <param name="regex_replace" type="text" value="" label="replacement expression">
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	169 <sanitizer sanitize="False"/>
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	170 </param>
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	171 </when>
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	172 <when value="normalize">
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	173 <param name="columns" type="text" value="" label="enter column numbers to normalize">
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	174 <help><![CDATA[
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	175 example: 2,4 or c2,c4 (selects the second, and fourth columns)
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	176 If multiple columns are selected, they should have the same length and separator on each line
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	177 ]]></help>
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	178 <validator type="regex" message="Column ordinal positions separated by commas">^(c?[1-9]\d)(,c?[1-9]\d)*$</validator>
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	179 </param>
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	180 <param name="separator" type="text" value="," label="List item delimiter in column">
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	181 <sanitizer sanitize="False"/>
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	182 <validator type="regex" message="Anything but TAB or Newline">^[^\t\n\r\f\v]+$</validator>
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	183 </param>
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	184 </when>
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	185 </conditional>
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	186 </repeat>
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	187 </xml>
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	188
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	189 <token name="@LINEFILTERS_HELP@">
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	190 <![CDATA[
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	191 Input Line Filters
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	192
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	193 As a tabular file is being read, line filters may be applied.
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	194
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	195 ::
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	196
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	197 - skip leading lines skip the first number of lines
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	198 - comment char omit any lines that start with the specified comment character
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	199 - by regex expression matching include/exclude lines the match the regex expression
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	200 - select columns choose to include only selected columns in the order specified
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	201 - regex replace value in column replace a field in a column using a regex substitution (good for date reformatting)
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	202 - prepend a line number column each line has the ordinal value of the line read by this filter as the first column
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	203 - append a line number column each line has the ordinal value of the line read by this filter as the last column
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	204 - prepend a text column each line has the text string as the first column
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	205 - append a text column each line has the text string as the last column
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	206 - normalize list columns replicates the line for each item in the specified list columns
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	207 ]]>
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	208 </token>
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	209
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	210 <token name="@LINEFILTERS_HELP_EXAMPLE@">
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	211 <![CDATA[
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	212 Line Filtering Example
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	213 (Six filters are applied as the following file is read)
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	214
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	215 ::
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	216
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	217 Input Tabular File:
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	218
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	219 #People with pets
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	220 Pets FirstName LastName DOB PetNames PetType
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	221 2 Paula Brown 24/05/78 Rex,Fluff dog,cat
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	222 1 Steven Jones 04/04/74 Allie cat
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	223 0 Jane Doe 24/05/78
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	224 1 James Smith 20/10/80 Spot
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	225
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	226
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	227 Filter 1 - append a line number column:
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	228
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	229 #People with pets 1
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	230 Pets FirstName LastName DOB PetNames PetType 2
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	231 2 Paula Brown 24/05/78 Rex,Fluff dog,cat 3
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	232 1 Steven Jones 04/04/74 Allie cat 4
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	233 0 Jane Doe 24/05/78 5
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	234 1 James Smith 20/10/80 Spot 6
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	235
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	236 Filter 2 - by regex expression matching [include]: '^\d+' (include lines that start with a number)
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	237
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	238 2 Paula Brown 24/05/78 Rex,Fluff dog,cat 3
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	239 1 Steven Jones 04/04/74 Allie cat 4
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	240 0 Jane Doe 24/05/78 5
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	241 1 James Smith 20/10/80 Spot 6
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	242
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	243 Filter 3 - append a line number column:
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	244
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	245 2 Paula Brown 24/05/78 Rex,Fluff dog,cat 3 1
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	246 1 Steven Jones 04/04/74 Allie cat 4 2
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	247 0 Jane Doe 24/05/78 5 3
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	248 1 James Smith 20/10/80 Spot 6 4
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	249
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	250 Filter 4 - regex replace value in column[4]: '(\d+)/(\d+)/(\d+)' '19\3-\2-\1' (convert dates to sqlite format)
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	251
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	252 2 Paula Brown 1978-05-24 Rex,Fluff dog,cat 3 1
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	253 1 Steven Jones 1974-04-04 Allie cat 4 2
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	254 0 Jane Doe 1978-05-24 5 3
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	255 1 James Smith 1980-10-20 Spot 6 4
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	256
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	257 Filter 5 - normalize list columns[5,6]:
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	258
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	259 2 Paula Brown 1978-05-24 Rex dog 3 1
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	260 2 Paula Brown 1978-05-24 Fluff cat 3 1
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	261 1 Steven Jones 1974-04-04 Allie cat 4 2
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	262 0 Jane Doe 1978-05-24 5 3
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	263 1 James Smith 1980-10-20 Spot 6 4
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	264
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	265 Filter 6 - append a line number column:
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	266
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	267 2 Paula Brown 1978-05-24 Rex dog 3 1 1
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	268 2 Paula Brown 1978-05-24 Fluff cat 3 1 2
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	269 1 Steven Jones 1974-04-04 Allie cat 4 2 3
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	270 0 Jane Doe 1978-05-24 5 3 4
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	271 1 James Smith 1980-10-20 Spot 6 4 5
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	272
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	273 ]]>
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	274 </token>
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	275
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	276 <token name="@QUERY_HELP@">
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	277 <![CDATA[
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	278
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	279 For help in using SQLite_ see: http://www.sqlite.org/docs.html
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	280
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	281 NOTE: input for SQLite dates input field must be in the format: YYYY-MM-DD for example: 2015-09-30
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	282
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	283 See: http://www.sqlite.org/lang_datefunc.html
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	284
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	285 Example
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	286
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	287 Given 2 tabular datasets: customers and sales
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	288
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	289 Dataset customers
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	290
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	291 Table name: "customers"
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	292
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	293 Column names: "CustomerID,FirstName,LastName,Email,DOB,Phone"
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	294
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	295 =========== ========== ========== ===================== ========== ============
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	296 #CustomerID FirstName LastName Email DOB Phone
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	297 =========== ========== ========== ===================== ========== ============
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	298 1 John Smith John.Smith@yahoo.com 1968-02-04 626 222-2222
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	299 2 Steven Goldfish goldfish@fishhere.net 1974-04-04 323 455-4545
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	300 3 Paula Brown pb@herowndomain.org 1978-05-24 416 323-3232
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	301 4 James Smith jim@supergig.co.uk 1980-10-20 416 323-8888
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	302 =========== ========== ========== ===================== ========== ============
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	303
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	304 Dataset sales
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	305
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	306 Table name: "sales"
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	307
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	308 Column names: "CustomerID,Date,SaleAmount"
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	309
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	310 ============= ============ ============
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	311 #CustomerID Date SaleAmount
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	312 ============= ============ ============
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	313 2 2004-05-06 100.22
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	314 1 2004-05-07 99.95
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	315 3 2004-05-07 122.95
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	316 3 2004-05-13 100.00
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	317 4 2004-05-22 555.55
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	318 ============= ============ ============
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	319
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	320 The query
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	321
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	322 ::
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	323
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	324 SELECT FirstName,LastName,sum(SaleAmount) as "TotalSales"
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	325 FROM customers join sales on customers.CustomerID = sales.CustomerID
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	326 GROUP BY customers.CustomerID ORDER BY TotalSales DESC;
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	327
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	328 Produces this tabular output:
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	329
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	330 ========== ======== ==========
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	331 #FirstName LastName TotalSales
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	332 ========== ======== ==========
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	333 James Smith 555.55
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	334 Paula Brown 222.95
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	335 Steven Goldfish 100.22
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	336 John Smith 99.95
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	337 ========== ======== ==========
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	338
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	339
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	340 If the optional Table name and Column names inputs are not used, the query would be:
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	341
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	342 ::
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	343
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	344 SELECT t1.c2 as "FirstName", t1.c3 as "LastName", sum(t2.c3) as "TotalSales"
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	345 FROM t1 join t2 on t1.c1 = t2.c1
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	346 GROUP BY t1.c1 ORDER BY TotalSales DESC;
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	347
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	348 You can selectively name columns, e.g. on the customers input you could just name columns 2,3, and 5:
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	349
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	350 Column names: ,FirstName,LastName,,BirthDate
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	351
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	352 Results in the following data base table
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	353
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	354 =========== ========== ========== ===================== ========== ============
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	355 #c1 FirstName LastName c4 BirthDate c6
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	356 =========== ========== ========== ===================== ========== ============
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	357 1 John Smith John.Smith@yahoo.com 1968-02-04 626 222-2222
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	358 2 Steven Goldfish goldfish@fishhere.net 1974-04-04 323 455-4545
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	359 3 Paula Brown pb@herowndomain.org 1978-05-24 416 323-3232
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	360 4 James Smith jim@supergig.co.uk 1980-10-20 416 323-8888
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	361 =========== ========== ========== ===================== ========== ============
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	362
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	363
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	364 Regular_expression_ functions are included for:
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	365
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	366 ::
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	367
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	368 matching: re_match('pattern',column)
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	369
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	370 SELECT t1.FirstName, t1.LastName
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	371 FROM t1
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	372 WHERE re_match('^.*\.(net\|org)$',c4)
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	373
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	374 Results:
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	375
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	376 =========== ==========
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	377 #FirstName LastName
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	378 =========== ==========
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	379 Steven Goldfish
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	380 Paula Brown
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	381 =========== ==========
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	382
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	383
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	384 ::
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	385
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	386 searching: re_search('pattern',column)
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	387 substituting: re_sub('pattern','replacement,column)
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	388
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	389 SELECT t1.FirstName, t1.LastName, re_sub('^\d{2}(\d{2})-(\d\d)-(\d\d)','\3/\2/\1',BirthDate) as "DOB"
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	390 FROM t1
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	391 WHERE re_search('[hp]er',c4)
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	392
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	393 Results:
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	394
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	395
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	396 =========== ========== ==========
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	397 #FirstName LastName DOB
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	398 =========== ========== ==========
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	399 Steven Goldfish 04/04/74
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	400 Paula Brown 24/05/78
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	401 James Smith 20/10/80
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	402 =========== ========== ==========
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	403
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	404 .. _Regular_expression: https://docs.python.org/release/2.7/library/re.html
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	405 .. _SQLite: http://www.sqlite.org/index.html
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	406 .. _SQLite_functions: http://www.sqlite.org/docs.html
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	407
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	408
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	409 ]]>
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	410 </token>
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	411
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	412 </macros>
3708ff0198b7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular commit 74915fc9cee746bbce1c4b507e13231259de177d iuc parents: diff changeset	413

Mercurial > repos > iuc > query_tabular

annotate macros.xml @ 2:fb8484ee54d8 draft