Mercurial > repos > iuc > raceid_clustering

comparison raceid_clustering.xml @ 9:0bff0ee0683a draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raceid3 commit 82a18e57158136e265a26f27feb40f8dc13437bf
author iuc
date Wed, 24 Aug 2022 18:09:06 +0000
parents f911a64454fb
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8:f911a64454fb 9:0bff0ee0683a
31 <param name="sat" type="boolean" checked="true" label="Saturation-based clustering?" help="Determine number of clusters on saturation point of the mean within-cluster dispersion as a function of the cluster number." /> 31 <param name="sat" type="boolean" checked="true" label="Saturation-based clustering?" help="Determine number of clusters on saturation point of the mean within-cluster dispersion as a function of the cluster number." />
32 <param name="clustnr" type="integer" min="0" value="30" label="Max number of clusters using Saturation-by-mean" help="Max number of clusters for the derivation of the cluster number by the saturation of mean within-cluster-dispersion." /> 32 <param name="clustnr" type="integer" min="0" value="30" label="Max number of clusters using Saturation-by-mean" help="Max number of clusters for the derivation of the cluster number by the saturation of mean within-cluster-dispersion." />
33 <param name="samp" type="integer" min="0" optional="true" label="Sample random number of cells" help="Number of random sample of cells used for the inference of cluster number and Jaccard similarity" /><!-- 0:NULL --> 33 <param name="samp" type="integer" min="0" optional="true" label="Sample random number of cells" help="Number of random sample of cells used for the inference of cluster number and Jaccard similarity" /><!-- 0:NULL -->
34 <param name="cln" type="integer" min="0" optional="true" label="Number of clusters" /><!-- 0:Null --> 34 <param name="cln" type="integer" min="0" optional="true" label="Number of clusters" /><!-- 0:Null -->
35 <param name="bootnr" type="integer" min="0" value="50" label="Number of booststrapping runs" /> 35 <param name="bootnr" type="integer" min="0" value="50" label="Number of booststrapping runs" />
36 <param name="rseed" type="integer" value="17000" label="Random seed" />
37 </expand> 36 </expand>
38 </section> 37 </section>
39 <section name="outlier" title="Outliers" expanded="true" > 38 <section name="outlier" title="Outliers" expanded="true" >
40 <!-- Find Outliers --> 39 <!-- Find Outliers -->
41 <param name="outminc" type="integer" min="0" value="5" label="Minimum Transcripts" help="minimal transcript count of a gene in a clusters to be tested for being an outlier gene" /> 40 <param name="outminc" type="integer" min="0" value="5" label="Minimum Transcripts" help="minimal transcript count of a gene in a clusters to be tested for being an outlier gene" />