Mercurial > repos > iuc > raceid_clustering

comparison raceid_clustering.xml @ 5:7e014059a88d draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raceid3 commit 1ad3837c2251aba8bd997386c3c27f6cd5b1c9e7"
author iuc
date Wed, 29 Jan 2020 17:16:36 -0500
parents ee0bbc160cb1
children a4b734cd253b
comparison
equal deleted inserted replaced
4:ee0bbc160cb1 5:7e014059a88d
82 </data> 82 </data>
83 </outputs> 83 </outputs>
84 <tests> 84 <tests>
85 <test> 85 <test>
86 <param name="inputrds" value="matrix.filter.rdat" /> 86 <param name="inputrds" value="matrix.filter.rdat" />
87 <output name="outgenelist" value="matrix2.genelist" /> 87 <output name="outgenelist" value="matrix2.genelist" compare="re_match"/>
88 <output name="outrdat" value="matrix2.rdat" compare="sim_size" delta="15" /> 88 <output name="outrdat" value="matrix2.rdat" compare="sim_size" delta="15" />
89 <output name="outpdf" value="matrix2.pdf" compare="sim_size" delta="10" /> 89 <output name="outpdf" value="matrix2.pdf" compare="sim_size" delta="10" />
90 <output name="outassignments" > 90 <output name="outassignments" >
91 <assert_contents> 91 <assert_contents>
92 <has_line_matching expression="P1_B1_ATCCAC\s1\s1\sFALSE" /> 92 <has_line_matching expression="P1_B1_ATCCAC\s1\s1\sFALSE" />
125 <param name="initial_cmd" value="true" /> 125 <param name="initial_cmd" value="true" />
126 <param name="rseed_tsne" value="15555" /> 126 <param name="rseed_tsne" value="15555" />
127 <param name="rfseed_fr" value="15555" /> 127 <param name="rfseed_fr" value="15555" />
128 </expand> 128 </expand>
129 </section> 129 </section>
130 <output name="outgenelist" value="intestinal.genelist" /> 130 <output name="outgenelist" value="intestinal.genelist" compare="re_match"/>
131 <output name="outpdf" value="intestinal.pdf" compare="sim_size" delta="50" /> 131 <output name="outpdf" value="intestinal.pdf" compare="sim_size" delta="50" />
132 </test> 132 </test>
133 <test> 133 <test>
134 <!-- Advanced. Opts, CC used --> 134 <!-- Advanced. Opts, CC used -->
135 <param name="inputrds" value="matrix.filter.rdat" /> 135 <param name="inputrds" value="matrix.filter.rdat" />
166 <param name="initial_cmd" value="false" /> 166 <param name="initial_cmd" value="false" />
167 <param name="rseed_tsne" value="15555" /> 167 <param name="rseed_tsne" value="15555" />
168 <param name="rfseed_fr" value="15555" /> 168 <param name="rfseed_fr" value="15555" />
169 </expand> 169 </expand>
170 </section> 170 </section>
171 <output name="outgenelist" value="intestinal_advanced.genelist" /> 171 <output name="outgenelist" value="intestinal_advanced.genelist" compare="re_match"/>
172 <output name="outpdf" value="intestinal_advanced.pdf" compare="sim_size" delta="150" /> 172 <output name="outpdf" value="intestinal_advanced.pdf" compare="sim_size" delta="150" />
173 </test> 173 </test>
174 </tests> 174 </tests>
175 <help><![CDATA[ 175 <help><![CDATA[
176 RaceID3 176 RaceID3