Mercurial > repos > iuc > raceid_filtnormconf

diff raceid_filtnormconf.xml @ 6:43c146e25a43 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raceid3 commit 53916f6803b93234f992f5fd4fad61d7013d82af"
author iuc
date Thu, 15 Apr 2021 19:00:38 +0000
parents 7608d5faee41
children d45f092caf24
line wrap: on
line diff
--- a/raceid_filtnormconf.xml	Wed Jan 29 17:16:02 2020 -0500
+++ b/raceid_filtnormconf.xml	Thu Apr 15 19:00:38 2021 +0000
@@ -1,4 +1,4 @@
-<tool id="raceid_filtnormconf" name="Initial processing using RaceID" version="@VERSION_RACEID@.@VERSION_WRAPPER@" >
+<tool id="raceid_filtnormconf" name="Initial processing using RaceID" version="@VERSION_RACEID@+galaxy@VERSION_WRAPPER@" >
     <description>performs filtering, normalisation, and confounder removal to generate a normalised and filtered count matrix of single-cell RNA data</description>
     <macros>
         <import>macros.xml</import>
@@ -27,7 +27,7 @@
                 <param name="ccor" type="float" value="0.4" label="CCor" help="Correlation coefficient used as a threshold for determining correlated genes" />
                 <param name="bmode" type="select" label="Batch Mode" help="Method to regress out batch effects" >
                     <option value="RaceID" selected="true" >RaceID</option>
-                    <option value="scran">SCRAN</option>
+                    <!-- <option value="scran">SCRAN</option> -->
                 </param>
                 <conditional name="ccc" >
                     <param name="use" type="select" label="Perform Cell-cycle correction?" >
@@ -120,7 +120,7 @@
                     <param name="CGenes" value="Gga3,Ggact,Ggct" />
                     <param name="FGenes" value="Zxdc,Zyg11a,Zyg11b,Zyx" />
                     <param name="LBatch_regexes" value="^I5,^II5,^III5,^IV5d,^V5d" />
-                    <param name="bmode" value="scran" />
+                    <!-- <param name="bmode" value="scran" /> -->
                     <conditional name="ccc" >
                         <param name="use" value="yes" />
                         <param name="pvalue" value="0.05" />