Mercurial > repos > iuc > raceid_filtnormconf

changeset 8:c891d8b33ede draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raceid3 commit 455bad7eca54164f95755174904842907846bb42"
author iuc
date Mon, 20 Dec 2021 10:12:14 +0000
parents d45f092caf24
children b83fbc90161e
files macros.xml raceid_filtnormconf.xml
diffstat 2 files changed, 5 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/macros.xml	Thu Dec 02 16:22:21 2021 +0000
+++ b/macros.xml	Mon Dec 20 10:12:14 2021 +0000
@@ -26,7 +26,8 @@
 }
     </token>
     <token name="@TOOL_VERSION@">0.2.3</token>
-    <token name="@VERSION_SUFFIX@">1</token>
+    <token name="@VERSION_SUFFIX@">2</token>
+    <token name="@PROFILE@">21.01</token>
 
     <macro name="version_command_config" token_prog="temp" token_cheetah="temp2" token_out="2&#62; '$outlog'">
         <version_command><![CDATA[
--- a/raceid_filtnormconf.xml	Thu Dec 02 16:22:21 2021 +0000
+++ b/raceid_filtnormconf.xml	Mon Dec 20 10:12:14 2021 +0000
@@ -1,4 +1,4 @@
-<tool id="raceid_filtnormconf" name="Initial processing using RaceID" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" >
+<tool id="raceid_filtnormconf" name="Initial processing using RaceID" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
     <description>performs filtering, normalisation, and confounder removal to generate a normalised and filtered count matrix of single-cell RNA data</description>
     <macros>
         <import>macros.xml</import>
@@ -56,7 +56,7 @@
     <outputs>
         <data name="outtable" format="tabular" label="${tool.name} on ${on_string}: Normalised Matrix" />
         <data name="outpdf" format="pdf" label="${tool.name} on ${on_string}: PDF Report" />
-        <data name="outrdat" format="rdata" label="${tool.name} on ${on_string}: RDS" />
+        <data name="outrdat" format="rds" label="${tool.name} on ${on_string}: RDS" />
         <data name="outlog" format="txt" label="${tool.name} on ${on_string}: Metrics"  />
     </outputs>
     <tests>
@@ -81,7 +81,7 @@
                 <param name="minexpr" value="1" />
                 <param name="minnumber" value="3" />
             </section>
-            <output name="outrdat" value="matrix.filter.rdat" compare="sim_size" delta="1000" />
+            <output name="outrdat" value="matrix.filter.rdat" compare="sim_size" />
             <output name="outpdf" value="matrix.filter.pdf" compare="sim_size" delta="10" />
         </test>
         <test expect_num_outputs="4">