Mercurial > repos > iuc > raceid_inspecttrajectory
diff macros_cheetah.xml @ 9:a6821f856a1e draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raceid3 commit 82a18e57158136e265a26f27feb40f8dc13437bf
| author | iuc |
|---|---|
| date | Wed, 24 Aug 2022 18:10:56 +0000 |
| parents | c8434a623268 |
| children |
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--- a/macros_cheetah.xml Mon Dec 20 10:11:41 2021 +0000 +++ b/macros_cheetah.xml Wed Aug 24 18:10:56 2022 +0000 @@ -104,7 +104,6 @@ clust.clustexp\$cln = as.integer( '$clust.use.cln' ) clust.clustexp\$clustnr = as.integer( '$clust.use.clustnr' ) clust.clustexp\$bootnr = as.integer( '$clust.use.bootnr' ) -##clust.clustexp\$rseed = as.integer( '$clust.use.rseed' ) #end if #end if @@ -313,12 +312,12 @@ <token name="@INSPECTTRAJECTORIES_CHEETAH@"><![CDATA[ in.rdat = readRDS('${inputrds}') -perform.stemID = FALSE -perform.fateID = FALSE -perform.fateID.sominspect = FALSE +perform.stemid = FALSE +perform.fateid = FALSE +perform.fateid.sominspect = FALSE #if str($trjsid.basic.doit) == "yes" -perform.stemID = TRUE +perform.stemid = TRUE trjsid.getproj = formals(getproj) trjsid.numdiffgenes = 10 @@ -334,29 +333,29 @@ #end if #if str($trjfid.basic.doit) == "yes": -perform.fateID = TRUE -trjfid.cellsfrom = formals(cellsfromtree) -trjfid.filterset = formals(filterset) -trjfid.getsom = formals(getsom) -trjfid.procsom = formals(procsom) -trjfid.plotheat = list() +perform.fateid = TRUE +trjfid_cellsfrom = formals(cellsfromtree) +trjfid_filterset = formals(filterset) +trjfid_getsom = formals(getsom) +trjfid_procsom = formals(procsom) +trjfid_plotheat = list() -trjfid.cellsfrom\$z = string2numericvector( '$trjfid.basic.cellsfromz' ) +trjfid_cellsfrom\$z = string2numericvector( '$trjfid.basic.cellsfromz' ) #if str($trjfid.basic.use.def) == "no": -trjfid.filterset\$minexpr = as.integer( '$trjfid.basic.use.filterset_minexpr' ) -trjfid.filterset\$minnumber = as.integer( '$trjfid.basic.use.filterset_minnumber' ) -trjfid.getsom\$nb = as.numeric( '$trjfid.basic.use.getsom_nb' ) -trjfid.getsom\$alpha = as.numeric( '$trjfid.basic.use.getsom_alpha' ) -trjfid.procsom\$corthr = as.numeric( '$trjfid.basic.use.procsom_corthr' ) -trjfid.procsom\$minsom = as.integer( '$trjfid.basic.use.procsom_minsom' ) -trjfid.plotheat\$xgrid = as.logical( '$trjfid.basic.use.plotheat_xgrid' ) -trjfid.plotheat\$ygrid = as.logical( '$trjfid.basic.use.plotheat_ygrid' ) -trjfid.plotheat\$xlab = as.logical( '$trjfid.basic.use.plotheat_xlab' ) +trjfid_filterset\$minexpr = as.integer( '$trjfid.basic.use.filterset_minexpr' ) +trjfid_filterset\$minnumber = as.integer( '$trjfid.basic.use.filterset_minnumber' ) +trjfid_getsom\$nb = as.numeric( '$trjfid.basic.use.getsom_nb' ) +trjfid_getsom\$alpha = as.numeric( '$trjfid.basic.use.getsom_alpha' ) +trjfid_procsom\$corthr = as.numeric( '$trjfid.basic.use.procsom_corthr' ) +trjfid_procsom\$minsom = as.integer( '$trjfid.basic.use.procsom_minsom' ) +trjfid_plotheat\$xgrid = as.logical( '$trjfid.basic.use.plotheat_xgrid' ) +trjfid_plotheat\$ygrid = as.logical( '$trjfid.basic.use.plotheat_ygrid' ) +trjfid_plotheat\$xlab = as.logical( '$trjfid.basic.use.plotheat_xlab' ) #end if #if str($trjfid.basic.som.doit) == "yes": -perform.fateID.sominspect = TRUE +perform.fateid.sominspect = TRUE trjfidsomi = list() #if str($trjfid.basic.som.use_genes.typer) == "genelist":