Mercurial > repos > iuc > ragtag

diff test-data/correct_log_01.fasta @ 0:a04e64efa43a draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ragtag commit 4c4b2a548b4ce46da88810992459b3ac8581d035"
author: iuc
date: Wed, 10 Nov 2021 23:33:13 +0000
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/correct_log_01.fasta	Wed Nov 10 23:33:13 2021 +0000
@@ -0,0 +1,10 @@
+[M::mm_idx_gen::0.023*1.04] collected minimizers
+[M::mm_idx_gen::0.031*1.48] sorted minimizers
+[M::main::0.031*1.48] loaded/built the index for 1 target sequence(s)
+[M::mm_mapopt_update::0.033*1.45] mid_occ = 100
+[M::mm_idx_stat] kmer size: 19; skip: 19; is_hpc: 0; #seq: 1
+[M::mm_idx_stat::0.035*1.43] distinct minimizers: 50129 (99.93% are singletons); average occurrences: 1.001; average spacing: 9.979; total length: 500542
+[M::worker_pipeline::0.051*1.65] mapped 5 sequences
+[M::main] Version: 2.22-r1101
+[M::main] CMD: minimap2 -k19 -w19 -A1 -B19 -O39,81 -E3,1 -s200 -z200 --min-occ-floor=100 /tmp/tmp2_4ovdv4/files/2/0/6/dataset_2063f17a-abd0-460a-82b7-b75ed97acad8.dat /tmp/tmp2_4ovdv4/files/e/b/4/dataset_eb40ae7f-b8f4-4a47-b4df-224c934f88af.dat
+[M::main] Real time: 0.054 sec; CPU: 0.088 sec; Peak RSS: 0.018 GB