# HG changeset patch
# User iuc
# Date 1634309763 0
# Node ID 3edba9afc9bce6318f5b76435f646074c1de332f
# Parent  f8564b2d7f63bc1561cebe8f21eb748f2d7214d8
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/raven commit a64e791889cae72cf8cf029de8c65fa35d91b16d"

diff -r f8564b2d7f63 -r 3edba9afc9bc macros.xml
--- a/macros.xml	Mon Sep 13 19:42:19 2021 +0000
+++ b/macros.xml	Fri Oct 15 14:56:03 2021 +0000
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
 <macros>
-    <token name="@TOOL_VERSION@">1.5.3</token>
+    <token name="@TOOL_VERSION@">1.6.1</token>
     <token name="@PROFILE@">20.05</token>
     <xml name="requirements">
         <requirements>
diff -r f8564b2d7f63 -r 3edba9afc9bc raven.xml
--- a/raven.xml	Mon Sep 13 19:42:19 2021 +0000
+++ b/raven.xml	Fri Oct 15 14:56:03 2021 +0000
@@ -25,8 +25,10 @@
     ln -s '$input_reads' ./input.fq.gz &&
     #set input = "input.fq.gz"
 #end if
-raven 
-$weaken
+raven
+--kmer-len '$kmer_len'
+--window-len '$window_len'
+--frequency '$frequency'
 --polishing-rounds '$polishing_rounds'
 --match '$match'
 --mismatch '$mismatch'
@@ -39,7 +41,9 @@
     ]]></command>
     <inputs>
         <param name="input_reads" type="data" format="fasta,fastq,fasta.gz,fastq.gz"/>
-        <param argument="--weaken" type="boolean" truevalue="--weaken" falsevalue="" label="use larger (k, w); (for use in assembling highly accurate sequences)" checked="false"/>
+        <param argument="--kmer-len" type="integer" value="15" label="Length of minimizers used to find overlaps"/>
+        <param argument="--window-len" type="integer" value="5" label="Length of sliding window from which minimizers are sampled"/>
+        <param argument="--frequency" type="float" value="0.001" label="Threshold for ignoring most frequent minimizers"/>
         <param argument="--polishing-rounds" type="integer" value="2" min="0" label="Number of times racon polishing is invoked"/>
         <param argument="--match" type="integer" value="3"/>
         <param argument="--mismatch" type="integer" value="-5"/>