# HG changeset patch # User iuc # Date 1558633490 14400 # Node ID 5aa52484bef2954cb9404ea69f7d6a1748560898 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rdavidwebservice commit b664316c8917dff50de40207c2b3104ed850b90b diff -r 000000000000 -r 5aa52484bef2 macros.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/macros.xml Thu May 23 13:44:50 2019 -0400 @@ -0,0 +1,44 @@ + + + 1.20.0 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + \ No newline at end of file diff -r 000000000000 -r 5aa52484bef2 rdavidwebservice.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/rdavidwebservice.xml Thu May 23 13:44:50 2019 -0400 @@ -0,0 +1,372 @@ + + + Run functional annotation using DAVID + + + macros.xml + + + bioconductor-rdavidwebservice + + + + + + + + + + + + ^'*[Yy]es'*$ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + FunctionalAnnotationCluster['set_FACluster_params'] == 'Yes' + + + FunctionalAnnotationChart['set_FAChart_params'] == 'Yes' + + + FunctionalAnnotationTable['set_FATable_params'] == 'Yes' + + + GeneListReport['set_GLReport_params'] == 'Yes' + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 10.1093/bioinformatics/btt487 + 10.1038/nprot.2008.211 + + diff -r 000000000000 -r 5aa52484bef2 test-data/demolist1 --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/demolist1 Thu May 23 13:44:50 2019 -0400 @@ -0,0 +1,164 @@ +1112_g_at +1331_s_at +1355_g_at +1372_at +1391_s_at +1403_s_at +1419_g_at +1575_at +1645_at +1786_at +1855_at +1890_at +1901_s_at +1910_s_at +1974_s_at +1983_at +2090_i_at +31506_s_at +31512_at +31525_s_at +31621_s_at +31687_f_at +31715_at +31793_at +32073_at +32084_at +32148_at +32163_f_at +32250_at +32279_at +32413_at +32418_at +32439_at +32469_at +32680_at +32717_at +33027_at +33080_s_at +33284_at +33293_at +33371_s_at +33516_at +33530_at +33684_at +33685_at +33922_at +33963_at +33979_at +34012_at +34233_i_at +34249_at +34436_at +34453_at +34467_g_at +34539_at +34546_at +34577_at +34606_s_at +34618_at +34623_at +34629_at +34636_at +34702_f_at +34703_f_at +34720_at +34972_s_at +35038_at +35069_at +35090_g_at +35091_at +35121_at +35169_at +35213_at +35367_at +35373_at +35439_at +35566_f_at +35595_at +35648_at +35896_at +35903_at +35915_at +35956_s_at +36234_at +36317_at +36328_at +36378_at +36436_at +36479_at +36703_at +36713_at +36766_at +37061_at +37096_at +37097_at +37105_at +37166_at +37172_at +37408_at +37454_at +37711_at +37814_g_at +37898_r_at +37905_r_at +37953_s_at +37954_at +37968_at +37983_at +38103_at +38128_at +38201_at +38229_at +38236_at +38482_at +38508_s_at +38604_at +38646_s_at +38674_at +38691_s_at +38816_at +38945_at +38948_at +39094_at +39187_at +39198_s_at +39469_s_at +39511_at +39698_at +39908_at +40058_s_at +40089_at +40186_at +40271_at +40294_at +40317_at +40350_at +40735_at +40790_at +40959_at +41113_at +41280_r_at +41489_at +606_at +679_at +822_s_at +919_at +936_s_at +966_at +967_g_at +32010_at +33077_at +36696_at +36421_at +31987_at +35996_at +38926_at +33246_at +40553_at +41703_r_at +34902_at +32407_f_at +34529_at +31576_at +1937_at