Mercurial > repos > iuc > recentrifuge
annotate test-data/centrifuge_test/test2_csv.log @ 6:d4fbfd31696c draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/recentrifuge commit 42b2d78b4badb653e84e15de35024368d48fce9b
| author | iuc |
|---|---|
| date | Mon, 29 Jul 2024 07:03:15 +0000 |
| parents | 12f0968f171c |
| children |
| rev | line source |
|---|---|
|
0
09b7b0b2e2c2
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
diff
changeset
|
1 |
|
4
12f0968f171c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/recentrifuge commit fbb5d7bb68cbb5f497cdda3c0697b21b046a8262
iuc
parents:
1
diff
changeset
|
2 =-= /home/pierre/miniconda3/envs/__recentrifuge@1.13.2/bin/rcf =-= v1.13.2 - Jan 2024 =-= by Jose Manuel Martà =-= |
|
0
09b7b0b2e2c2
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
diff
changeset
|
3 |
|
1
fe733f05c2f8
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 9142693589056424fb64869b69dbc08b179f57ee
iuc
parents:
0
diff
changeset
|
4 [90mCentrifuge .out files to analyze:[0m ['input_dir/centrifuge_out.out'] |
|
0
09b7b0b2e2c2
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
diff
changeset
|
5 [90mLoading NCBI nodes...[0m[92m OK! [0m |
|
09b7b0b2e2c2
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
diff
changeset
|
6 [90mLoading NCBI names...[0m[92m OK! [0m |
|
09b7b0b2e2c2
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
diff
changeset
|
7 [90mBuilding dict of parent to children taxa...[0m[92m OK! [0m |
|
09b7b0b2e2c2
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
diff
changeset
|
8 [90m |
|
09b7b0b2e2c2
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
diff
changeset
|
9 Please, wait, processing files in parallel... |
|
09b7b0b2e2c2
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
diff
changeset
|
10 [0m |
|
1
fe733f05c2f8
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 9142693589056424fb64869b69dbc08b179f57ee
iuc
parents:
0
diff
changeset
|
11 [90mLoading output file input_dir/centrifuge_out.out... [0m[92mOK! |
|
0
09b7b0b2e2c2
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
diff
changeset
|
12 [0m[90m Seqs read: [0m10_999 [90m[[0m4.22 Mnt[90m] |
|
09b7b0b2e2c2
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
diff
changeset
|
13 [0m[90m Seqs clas: [0m10_354 [90m([0m5.86%[90m unclassified) |
|
09b7b0b2e2c2
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
diff
changeset
|
14 [0m[90m Seqs pass: [0m10_354 [90m([0m0.00%[90m rejected) |
|
09b7b0b2e2c2
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
diff
changeset
|
15 [0m[90m Scores: min = [0m23.0[90m, max = [0m400.1[90m, avr = [0m190.7 |
|
09b7b0b2e2c2
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
diff
changeset
|
16 [90m Length: min = [0m70 nt[90m, max = [0m602 nt[90m, avr = [0m387 nt |
|
09b7b0b2e2c2
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
diff
changeset
|
17 [90m TaxIds: by classifier = [0m215[90m, by filter = [0m215 |
|
09b7b0b2e2c2
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
diff
changeset
|
18 [90mBuilding from raw data with mintaxa = [0m4[90m ... |
|
09b7b0b2e2c2
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
diff
changeset
|
19 [0m[90m Check for more seqs lost ([in/ex]clude affects)... [0m[94m |
|
09b7b0b2e2c2
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
diff
changeset
|
20 Info:[0m 10279 [90madditional seqs discarded ([0m99.276% [90mof accepted) |
|
09b7b0b2e2c2
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
diff
changeset
|
21 [0m[93m |
|
09b7b0b2e2c2
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
diff
changeset
|
22 Warning![0m 210 orphan taxids[90m (rerun with --debug for details) |
|
1
fe733f05c2f8
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 9142693589056424fb64869b69dbc08b179f57ee
iuc
parents:
0
diff
changeset
|
23 [0minput_dir/centrifuge_out[94m sample [0m[92mOK! |
|
4
12f0968f171c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/recentrifuge commit fbb5d7bb68cbb5f497cdda3c0697b21b046a8262
iuc
parents:
1
diff
changeset
|
24 [0m[90mLoad elapsed time: [0m0.0232[90m sec |
|
0
09b7b0b2e2c2
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
diff
changeset
|
25 [0m |
|
09b7b0b2e2c2
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
diff
changeset
|
26 [90m |
|
09b7b0b2e2c2
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
diff
changeset
|
27 Building the taxonomy multiple tree... [0m[92mOK![0m |
|
1
fe733f05c2f8
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit 9142693589056424fb64869b69dbc08b179f57ee
iuc
parents:
0
diff
changeset
|
28 [90mGenerating csv extra output ([0m[95m[output.rcf.]*.csv[0m[90m)... [0m[92mOK![0m |
|
0
09b7b0b2e2c2
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
iuc
parents:
diff
changeset
|
29 [90mTotal elapsed time:[0m 00:00:00 |