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comparison test-data/test-db/gc.prt @ 0:09b7b0b2e2c2 draft

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planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
author iuc
date Mon, 27 Jun 2022 11:03:22 +0000
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-1:000000000000 0:09b7b0b2e2c2
1 --**************************************************************************
2 -- This is the NCBI genetic code table
3 -- Initial base data set from Andrzej Elzanowski while at PIR International
4 -- Addition of Eubacterial and Alternative Yeast by J.Ostell at NCBI
5 -- Base 1-3 of each codon have been added as comments to facilitate
6 -- readability at the suggestion of Peter Rice, EMBL
7 -- Later additions by Taxonomy Group staff at NCBI
8 --
9 -- Version 4.6
10 -- Renamed genetic code 24 to Rhabdopleuridae Mitochondrial
11 --
12 -- Version 4.5
13 -- Added Cephalodiscidae mitochondrial genetic code 33
14 --
15 -- Version 4.4
16 -- Added GTG as start codon for genetic code 3
17 -- Added Balanophoraceae plastid genetic code 32
18 --
19 -- Version 4.3
20 -- Change to CTG -> Leu in genetic codes 27, 28, 29, 30
21 --
22 -- Version 4.2
23 -- Added Karyorelict nuclear genetic code 27
24 -- Added Condylostoma nuclear genetic code 28
25 -- Added Mesodinium nuclear genetic code 29
26 -- Added Peritrich nuclear genetic code 30
27 -- Added Blastocrithidia nuclear genetic code 31
28 --
29 -- Version 4.1
30 -- Added Pachysolen tannophilus nuclear genetic code 26
31 --
32 -- Version 4.0
33 -- Updated version to reflect numerous undocumented changes:
34 -- Corrected start codons for genetic code 25
35 -- Name of new genetic code is Candidate Division SR1 and Gracilibacteria
36 -- Added candidate division SR1 nuclear genetic code 25
37 -- Added GTG as start codon for genetic code 24
38 -- Corrected Pterobranchia Mitochondrial genetic code (24)
39 -- Added genetic code 24, Pterobranchia Mitochondrial
40 -- Genetic code 11 is now Bacterial, Archaeal and Plant Plastid
41 -- Fixed capitalization of mitochondrial in codes 22 and 23
42 -- Added GTG, ATA, and TTG as alternative start codons to code 13
43 --
44 -- Version 3.9
45 -- Code 14 differs from code 9 only by translating UAA to Tyr rather than
46 -- STOP. A recent study (Telford et al, 2000) has found no evidence that
47 -- the codon UAA codes for Tyr in the flatworms, but other opinions exist.
48 -- There are very few GenBank records that are translated with code 14,
49 -- but a test translation shows that retranslating these records with code
50 -- 9 can cause premature terminations. Therefore, GenBank will maintain
51 -- code 14 until further information becomes available.
52 --
53 -- Version 3.8
54 -- Added GTG start to Echinoderm mitochondrial code, code 9
55 --
56 -- Version 3.7
57 -- Added code 23 Thraustochytrium mitochondrial code
58 -- formerly OGMP code 93
59 -- submitted by Gertraude Berger, Ph.D.
60 --
61 -- Version 3.6
62 -- Added code 22 TAG-Leu, TCA-stop
63 -- found in mitochondrial DNA of Scenedesmus obliquus
64 -- submitted by Gertraude Berger, Ph.D.
65 -- Organelle Genome Megasequencing Program, Univ Montreal
66 --
67 -- Version 3.5
68 -- Added code 21, Trematode Mitochondrial
69 -- (as deduced from: Garey & Wolstenholme,1989; Ohama et al, 1990)
70 -- Added code 16, Chlorophycean Mitochondrial
71 -- (TAG can translated to Leucine instaed to STOP in chlorophyceans
72 -- and fungi)
73 --
74 -- Version 3.4
75 -- Added CTG,TTG as allowed alternate start codons in Standard code.
76 -- Prats et al. 1989, Hann et al. 1992
77 --
78 -- Version 3.3 - 10/13/95
79 -- Added alternate intiation codon ATC to code 5
80 -- based on complete mitochondrial genome of honeybee
81 -- Crozier and Crozier (1993)
82 --
83 -- Version 3.2 - 6/24/95
84 -- Code Comments
85 -- 10 Alternative Ciliate Macronuclear renamed to Euplotid Macro...
86 -- 15 Blepharisma Macro.. code added
87 -- 5 Invertebrate Mito.. GTG allowed as alternate initiator
88 -- 11 Eubacterial renamed to Bacterial as most alternate starts
89 -- have been found in Archea
90 --
91 --
92 -- Version 3.1 - 1995
93 -- Updated as per Andrzej Elzanowski at NCBI
94 -- Complete documentation in NCBI toolkit documentation
95 -- Note: 2 genetic codes have been deleted
96 --
97 -- Old id Use id - Notes
98 --
99 -- id 7 id 4 - Kinetoplast code now merged in code id 4
100 -- id 8 id 1 - all plant chloroplast differences due to RNA edit
101 --
102 --
103 --*************************************************************************
104
105 Genetic-code-table ::= {
106 {
107 name "Standard" ,
108 name "SGC0" ,
109 id 1 ,
110 ncbieaa "FFLLSSSSYY**CC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG",
111 sncbieaa "---M------**--*----M---------------M----------------------------"
112 -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
113 -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
114 -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
115 },
116 {
117 name "Vertebrate Mitochondrial" ,
118 name "SGC1" ,
119 id 2 ,
120 ncbieaa "FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIMMTTTTNNKKSS**VVVVAAAADDEEGGGG",
121 sncbieaa "----------**--------------------MMMM----------**---M------------"
122 -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
123 -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
124 -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
125 },
126 {
127 name "Yeast Mitochondrial" ,
128 name "SGC2" ,
129 id 3 ,
130 ncbieaa "FFLLSSSSYY**CCWWTTTTPPPPHHQQRRRRIIMMTTTTNNKKSSRRVVVVAAAADDEEGGGG",
131 sncbieaa "----------**----------------------MM---------------M------------"
132 -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
133 -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
134 -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
135 },
136 {
137 name "Mold Mitochondrial; Protozoan Mitochondrial; Coelenterate
138 Mitochondrial; Mycoplasma; Spiroplasma" ,
139 name "SGC3" ,
140 id 4 ,
141 ncbieaa "FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG",
142 sncbieaa "--MM------**-------M------------MMMM---------------M------------"
143 -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
144 -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
145 -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
146 },
147 {
148 name "Invertebrate Mitochondrial" ,
149 name "SGC4" ,
150 id 5 ,
151 ncbieaa "FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIMMTTTTNNKKSSSSVVVVAAAADDEEGGGG",
152 sncbieaa "---M------**--------------------MMMM---------------M------------"
153 -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
154 -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
155 -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
156 },
157 {
158 name "Ciliate Nuclear; Dasycladacean Nuclear; Hexamita Nuclear" ,
159 name "SGC5" ,
160 id 6 ,
161 ncbieaa "FFLLSSSSYYQQCC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG",
162 sncbieaa "--------------*--------------------M----------------------------"
163 -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
164 -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
165 -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
166 },
167 {
168 name "Echinoderm Mitochondrial; Flatworm Mitochondrial" ,
169 name "SGC8" ,
170 id 9 ,
171 ncbieaa "FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIIMTTTTNNNKSSSSVVVVAAAADDEEGGGG",
172 sncbieaa "----------**-----------------------M---------------M------------"
173 -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
174 -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
175 -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
176 },
177 {
178 name "Euplotid Nuclear" ,
179 name "SGC9" ,
180 id 10 ,
181 ncbieaa "FFLLSSSSYY**CCCWLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG",
182 sncbieaa "----------**-----------------------M----------------------------"
183 -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
184 -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
185 -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
186 },
187 {
188 name "Bacterial, Archaeal and Plant Plastid" ,
189 id 11 ,
190 ncbieaa "FFLLSSSSYY**CC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG",
191 sncbieaa "---M------**--*----M------------MMMM---------------M------------"
192 -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
193 -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
194 -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
195 },
196 {
197 name "Alternative Yeast Nuclear" ,
198 id 12 ,
199 ncbieaa "FFLLSSSSYY**CC*WLLLSPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG",
200 sncbieaa "----------**--*----M---------------M----------------------------"
201 -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
202 -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
203 -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
204 },
205 {
206 name "Ascidian Mitochondrial" ,
207 id 13 ,
208 ncbieaa "FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIMMTTTTNNKKSSGGVVVVAAAADDEEGGGG",
209 sncbieaa "---M------**----------------------MM---------------M------------"
210 -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
211 -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
212 -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
213 },
214 {
215 name "Alternative Flatworm Mitochondrial" ,
216 id 14 ,
217 ncbieaa "FFLLSSSSYYY*CCWWLLLLPPPPHHQQRRRRIIIMTTTTNNNKSSSSVVVVAAAADDEEGGGG",
218 sncbieaa "-----------*-----------------------M----------------------------"
219 -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
220 -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
221 -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
222 } ,
223 {
224 name "Blepharisma Macronuclear" ,
225 id 15 ,
226 ncbieaa "FFLLSSSSYY*QCC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG",
227 sncbieaa "----------*---*--------------------M----------------------------"
228 -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
229 -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
230 -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
231 } ,
232 {
233 name "Chlorophycean Mitochondrial" ,
234 id 16 ,
235 ncbieaa "FFLLSSSSYY*LCC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG",
236 sncbieaa "----------*---*--------------------M----------------------------"
237 -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
238 -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
239 -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
240 } ,
241 {
242 name "Trematode Mitochondrial" ,
243 id 21 ,
244 ncbieaa "FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIMMTTTTNNNKSSSSVVVVAAAADDEEGGGG",
245 sncbieaa "----------**-----------------------M---------------M------------"
246 -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
247 -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
248 -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
249 } ,
250 {
251 name "Scenedesmus obliquus Mitochondrial" ,
252 id 22 ,
253 ncbieaa "FFLLSS*SYY*LCC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG",
254 sncbieaa "------*---*---*--------------------M----------------------------"
255 -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
256 -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
257 -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
258 } ,
259 {
260 name "Thraustochytrium Mitochondrial" ,
261 id 23 ,
262 ncbieaa "FF*LSSSSYY**CC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG",
263 sncbieaa "--*-------**--*-----------------M--M---------------M------------"
264 -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
265 -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
266 -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
267 } ,
268 {
269 name "Rhabdopleuridae Mitochondrial" ,
270 id 24 ,
271 ncbieaa "FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSSKVVVVAAAADDEEGGGG",
272 sncbieaa "---M------**-------M---------------M---------------M------------"
273 -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
274 -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
275 -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
276 } ,
277 {
278 name "Candidate Division SR1 and Gracilibacteria" ,
279 id 25 ,
280 ncbieaa "FFLLSSSSYY**CCGWLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG",
281 sncbieaa "---M------**-----------------------M---------------M------------"
282 -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
283 -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
284 -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
285 } ,
286 {
287 name "Pachysolen tannophilus Nuclear" ,
288 id 26 ,
289 ncbieaa "FFLLSSSSYY**CC*WLLLAPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG",
290 sncbieaa "----------**--*----M---------------M----------------------------"
291 -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
292 -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
293 -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
294 } ,
295 {
296 name "Karyorelict Nuclear" ,
297 id 27 ,
298 ncbieaa "FFLLSSSSYYQQCCWWLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG",
299 sncbieaa "--------------*--------------------M----------------------------"
300 -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
301 -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
302 -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
303 } ,
304 {
305 name "Condylostoma Nuclear" ,
306 id 28 ,
307 ncbieaa "FFLLSSSSYYQQCCWWLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG",
308 sncbieaa "----------**--*--------------------M----------------------------"
309 -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
310 -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
311 -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
312 } ,
313 {
314 name "Mesodinium Nuclear" ,
315 id 29 ,
316 ncbieaa "FFLLSSSSYYYYCC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG",
317 sncbieaa "--------------*--------------------M----------------------------"
318 -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
319 -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
320 -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
321 } ,
322 {
323 name "Peritrich Nuclear" ,
324 id 30 ,
325 ncbieaa "FFLLSSSSYYEECC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG",
326 sncbieaa "--------------*--------------------M----------------------------"
327 -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
328 -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
329 -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
330 } ,
331 {
332 name "Blastocrithidia Nuclear" ,
333 id 31 ,
334 ncbieaa "FFLLSSSSYYEECCWWLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG",
335 sncbieaa "----------**-----------------------M----------------------------"
336 -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
337 -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
338 -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
339 } ,
340 {
341 name "Balanophoraceae Plastid" ,
342 id 32 ,
343 ncbieaa "FFLLSSSSYY*WCC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG",
344 sncbieaa "---M------*---*----M------------MMMM---------------M------------"
345 -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
346 -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
347 -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
348 } ,
349 {
350 name "Cephalodiscidae Mitochondrial" ,
351 id 33 ,
352 ncbieaa "FFLLSSSSYYY*CCWWLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSSKVVVVAAAADDEEGGGG",
353 sncbieaa "---M-------*-------M---------------M---------------M------------"
354 -- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
355 -- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
356 -- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
357 }
358 }