Mercurial > repos > iuc > recentrifuge
diff test-data/kraken_test/test3_tsv.log @ 0:09b7b0b2e2c2 draft
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/recentrifuge commit fdcec50b71967011e4351eb347a9df2840be6bee
| author | iuc |
|---|---|
| date | Mon, 27 Jun 2022 11:03:22 +0000 |
| parents | |
| children | fe733f05c2f8 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/kraken_test/test3_tsv.log Mon Jun 27 11:03:22 2022 +0000 @@ -0,0 +1,30 @@ + +=-= /home/pierre/anaconda3/envs/__recentrifuge@1.8.1/bin/rcf =-= v1.8.1 - Mar 2022 =-= by Jose Manuel Martà =-= + +[93mCAUTION![0m --strain experimental mode activated! +[90mLoading NCBI nodes...[0m[92m OK! [0m +[90mLoading NCBI names...[0m[92m OK! [0m +[90mBuilding dict of parent to children taxa...[0m[92m OK! [0m +[90m +Please, wait, processing files in parallel... +[0m +[90mLoading output file /tmp/tmpz5ieggzi/files/f/9/b/dataset_f9b4a772-d0f2-4391-a7bb-7f055b4fce1e.dat... [0m[92mOK! +[0m[90m Seqs read: [0m99 [90m[[0m52.81 knt[90m] +[0m[90m Seqs clas: [0m99 [90m([0m0.00%[90m unclassified) +[0m[90m Seqs pass: [0m99 [90m([0m0.00%[90m rejected) +[0m[90m Scores SHEL: min = [0m36.0,[90m max = [0m347.0,[90m avr = [0m99.9 +[90m Coverage(%): min = [0m0.2,[90m max = [0m88.1,[90m avr = [0m15.4 +[90m Read length: min = [0m198 nt,[90m max = [0m602 nt,[90m avr = [0m533 nt +[90m TaxIds: by classifier = [0m13[90m, by filter = [0m13 +[90mBuilding from raw data with mintaxa = [0m2[90m ... +[0m[90m Check for more seqs lost ([in/ex]clude affects)... [0m[94m + Info:[0m 90 [90madditional seqs discarded ([0m90.909% [90mof accepted) +[0m[93m + Warning![0m 11 orphan taxids[90m (rerun with --debug for details) +[0m/tmp/tmpz5ieggzi/files/f/9/b/dataset_f9b4a772-d0f2-4391-a7bb-7f055b4fce1e[94m sample [0m[92mOK! +[0m[90mLoad elapsed time: [0m0.00373[90m sec +[0m +[90m +Building the taxonomy multiple tree... [0m[92mOK![0m +[90mGenerating tsv extra output ([0m[95m[output.rcf.]*.tsv[0m[90m)... [0m[92mOK![0m +[90mTotal elapsed time:[0m 00:00:00