Mercurial > repos > iuc > recentrifuge

diff recentrifuge.xml @ 3:b5407cc2bf51 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/recentrifuge commit 96f8a533278b4b6394aebd7a8f537513b0d29b1a
author iuc
date Thu, 31 Aug 2023 04:46:52 +0000
parents fe733f05c2f8
children
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--- a/recentrifuge.xml	Mon Oct 31 18:18:11 2022 +0000
+++ b/recentrifuge.xml	Thu Aug 31 04:46:52 2023 +0000
@@ -187,9 +187,9 @@
         </section>
     <!-- Detailed more fine parameters -->
         <section name="more_advanced_option" title=" Fine tuning of algorithm parameters">
-            <param name="ctrlminscore" argument="--ctrlminscore" type="integer" optional="true" value="0" label="Minimum score in control samples to pass the filter" help="Minimum score/confidence of the classification of a read in control samples to pass the quality filter; it defaults to minscore"/>
-            <param name="ctrlmintaxa"  argument="--ctrlmintaxa"  type="integer" optional="true" value="0" label="Minimum taxa to avoid collapsing one level into the parent" help="If not specified a value will be automatically assigned"/>
-            <param name="summary" argument="--summary" type="select" label="Add a summary of the analysis (default is Add)" help="Select to 'add' summary samples to other samples, or to 'only' show summary samples or to 'avoid' summaries at all">
+            <param argument="--ctrlminscore" type="integer" optional="true" value="0" label="Minimum score in control samples to pass the filter" help="Minimum score/confidence of the classification of a read in control samples to pass the quality filter; it defaults to minscore"/>
+            <param argument="--ctrlmintaxa"  type="integer" optional="true" value="0" label="Minimum taxa to avoid collapsing one level into the parent" help="If not specified a value will be automatically assigned"/>
+            <param argument="--summary" type="select" label="Add a summary of the analysis (default is Add)" help="Select to 'add' summary samples to other samples, or to 'only' show summary samples or to 'avoid' summaries at all">
                 <option value="ADD" selected="true">Add</option>
                 <option value="ONLY">Only</option>
                 <option value="AVOID">Avoid</option>